Alignments for a candidate for hisD in Arcobacter nitrofigilis DSM 7299

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate WP_013134453.1 ARNIT_RS03215 histidinol dehydrogenase

Query= BRENDA::Q8G2R2
         (430 letters)



>NCBI__GCF_000092245.1:WP_013134453.1
          Length = 430

 Score =  349 bits (895), Expect = e-100
 Identities = 181/425 (42%), Positives = 277/425 (65%), Gaps = 1/425 (0%)

Query: 5   LRQTDPDFEQKFAAFLSGKREVSEDVDRAVREIVDRVRREGDSALLDYSRRFDRIDLEK- 63
           +  TD +F+++F   L+  +   + V   V  I+D +  +G+ A+ ++  +FD+ ++++ 
Sbjct: 4   INTTDSNFKEEFENILARAKTDIKGVSAIVTNIIDEIVEKGNGAIKEHILKFDKWEVKQD 63

Query: 64  TGIAVTEAEIDAAFDAAPASTVEALKLARDRIEKHHARQLPKDDRYTDALGVELGSRWTA 123
           + + ++  ++  A++       ++L +A DRI+ +H +QLPK     +  G  LG + +A
Sbjct: 64  SDLEISVEQMKKAYENIDEKLKKSLHIAYDRIKTYHEKQLPKSWIDFEKNGSILGQKVSA 123

Query: 124 IEAVGLYVPGGTASYPSSVLMNAMPAKVAGVDRIVMVVPAPDGNLNPLVLVAARLAGVSE 183
           ++  GLY+PGG A+YPSS+LMNA+PA VAGV+ IV+  P P+  +N L+L A  + G+ +
Sbjct: 124 VDRAGLYIPGGKAAYPSSLLMNAIPAIVAGVEEIVVCTPTPNDEINELLLAACHICGIKK 183

Query: 184 IYRVGGAQAIAALAYGTETIRPVAKIVGPGNAYVAAAKRIVFGTVGIDMIAGPSEVLIVA 243
            ++VGGA AIAA+AYGT+TI  V  I GPGN +VA AK++VFG V IDMIAGPSE+ I++
Sbjct: 184 AFKVGGASAIAAMAYGTQTIPKVDVITGPGNIFVATAKKLVFGEVNIDMIAGPSEIGILS 243

Query: 244 DKDNNPDWIAADLLAQAEHDTAAQSILMTNDEAFAHAVEEAVERQLHTLARTETASASWR 303
           D   NP ++A DLL+QAEHD  A SI++T  +  A      V+R L TL+R E A  S  
Sbjct: 244 DASANPRFLAIDLLSQAEHDEMASSIMITTCDKVAELTSIEVDRFLETLSRREIAKKSID 303

Query: 304 DFGAVILVKDFEDAIPLANRIAAEHLEIAVADAEAFVPRIRNAGSIFIGGYTPEVIGDYV 363
           D GA+I+  D ++AI L N IA EHLEI   +A   +P+I++AG+IF+G  TPE IGDY+
Sbjct: 304 DRGAIIIASDMQEAIKLMNEIAPEHLEIMTNNAFELLPKIKHAGAIFLGKNTPEPIGDYI 363

Query: 364 GGCNHVLPTARSARFSSGLSVLDYMKRTSLLKLGSEQLRALGPAAIEIARAEGLDAHAQS 423
            G NH LPT  +A+F S L+V +++K++S++    E +  LG A   +A  EGL AHA+S
Sbjct: 364 AGPNHTLPTGSTAKFYSPLNVENFLKKSSIISFSQEAIDELGEACALLADTEGLTAHAKS 423

Query: 424 VAIRL 428
           V +RL
Sbjct: 424 VRVRL 428


Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 378
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 430
Length adjustment: 32
Effective length of query: 398
Effective length of database: 398
Effective search space:   158404
Effective search space used:   158404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_013134453.1 ARNIT_RS03215 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.21179.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21179.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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