Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_013135283.1 ARNIT_RS07395 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000092245.1:WP_013135283.1
Length = 1079
Score = 1152 bits (2980), Expect = 0.0
Identities = 602/1070 (56%), Positives = 764/1070 (71%), Gaps = 27/1070 (2%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKR DIKSIL++G+GPI+IGQACEFDYSG QA K L+E GYRV+L+NSNPATIMTDPE
Sbjct: 1 MPKREDIKSILLIGSGPIIIGQACEFDYSGTQATKTLKELGYRVVLINSNPATIMTDPEF 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
AD TYIEPI +++ KII+KE DA+LPTMGGQTALN A + +G+L+ GV +GA
Sbjct: 61 ADRTYIEPITEDMIAKIIKKENIDAILPTMGGQTALNVATTMYDKGMLD--GVAFLGAHP 118
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
DAI K EDR F+ AM KIG++ +S A+++EEA+ VA ++GFP I R SFT+ G G G
Sbjct: 119 DAIKKGEDRHLFNEAMIKIGMDLPKSANAYSVEEAIKVAKEIGFPVISRASFTLAGGGSG 178
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
+AYN EEF+++ G++ SP E+ I ES++GWKEYEMEV+RD+ DNCIIVCSIEN D M
Sbjct: 179 VAYNMEEFKKLAEIGIEASPINEIEIMESMLGWKEYEMEVIRDRKDNCIIVCSIENLDPM 238
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDS+T+APA TLTDKEYQ MRNAS A+LREIGV+TGGSNVQF++ PK GR+IVIEM
Sbjct: 239 GVHTGDSVTIAPALTLTDKEYQDMRNASFAILREIGVDTGGSNVQFSICPKTGRMIVIEM 298
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATG+PIAKVA LAVG+TLDE+ NDITG T ASFEP IDYVVTKIP
Sbjct: 299 NPRVSRSSALASKATGYPIAKVATLLAVGFTLDEIENDITG--TTASFEPVIDYVVTKIP 356
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420
RF FEKF A+ LTT MKSVGEVMA+GRT ES+QKAL LE G GFDP +
Sbjct: 357 RFTFEKFPKADSTLTTSMKSVGEVMAMGRTFNESIQKALCSLETGLCGFDPIKA-----E 411
Query: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
+ KI+ E++ DR+ Y+ R GL+ + +F L+ ID W+L + ++V LE+ +
Sbjct: 412 MEKIKAEIRRPNCDRLLYLMQGMREGLTNEEIFELSKIDPWYLTKFRQIVDLEKSIDVSI 471
Query: 481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT 540
+T + +R +K GF+D +A L G +E +I + R + Y VDTCAAEF T
Sbjct: 472 LT--DEVKMRIIKSNGFSDKMIADLIGKKEEDIYQARKTLGVDFEYNEVDTCAAEFKALT 529
Query: 541 AYMYSTYE--EECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIM 598
Y+YST + + N T+ +K+M++GGGPNRIGQGIEFDYCCVHAS AL+E G +TIM
Sbjct: 530 PYLYSTTNVTKVPQVNKITNEKKVMIIGGGPNRIGQGIEFDYCCVHASFALKEMGIKTIM 589
Query: 599 VNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAG 658
NCNPETVSTDYDTSD LYFEP+ E V +V E P GVIV +GGQTPLKLA AL AAG
Sbjct: 590 YNCNPETVSTDYDTSDILYFEPIDFEHVRSVVEKENPDGVIVHFGGQTPLKLANALTAAG 649
Query: 659 VPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSY 718
+IGT+ + ID AEDR++F VE L QP N T + A+E A+ IGYP++VRPS+
Sbjct: 650 AKIIGTTAEVIDLAEDRKKFSKFVEDAGLLQPENGTAVEVTEAIEIAERIGYPVLVRPSF 709
Query: 719 VLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGI 778
VLGGR M+IVY +LR+Y AVSVSNDAPVL+D FLD A+E+DVD ICDG+ V IGGI
Sbjct: 710 VLGGRGMKIVYSTNELRQYMDEAVSVSNDAPVLIDKFLDRAIELDVDCICDGKEVYIGGI 769
Query: 779 MEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVY 838
M+HIE+AGVHSGDSACSLP ++S E+ + + + +A L V GLMN Q+A+ ++Y
Sbjct: 770 MQHIEEAGVHSGDSACSLPPVSISDELIKELETKTKNMALGLGVVGLMNTQYAIHKGQIY 829
Query: 839 LIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSL-------------AEQGVTKEVIP 885
LIEVNPRA+RTVPFVSKATG+PLAKVA RVM G+SL + GV K ++
Sbjct: 830 LIEVNPRASRTVPFVSKATGMPLAKVATRVMWGESLRNALDTYNTELVWEDNGVLKPILR 889
Query: 886 PYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRA 945
+ ++KE V PFNK G D +L PEM+STGEVMG+ +F E++AKAQ + + + G+
Sbjct: 890 NHVAIKEAVFPFNKLSGSDMILTPEMKSTGEVMGISDSFGESYAKAQSAAKNDIPTEGKV 949
Query: 946 LLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRI 1005
+S+ + DKE +A L+++GF + AT GT + +AGI V K+ EGRP+I D I
Sbjct: 950 FISLCDLDKEFAPKIAKGLVEEGFTVVATGGTHQAIADAGIECEKVLKISEGRPNIIDSI 1009
Query: 1006 KNGEYTYIINTTSGRRAI-EDSRVIRRSALQYKVHYDTTLNGGFATAMAL 1054
NGE INT+ G+ + +D + IRRS L+ V Y TT FA A+
Sbjct: 1010 TNGEIALAINTSDGKESSKDDGKNIRRSVLKMNVTYVTTAAAAFACLEAM 1059
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2864
Number of extensions: 145
Number of successful extensions: 17
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1079
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1033
Effective search space: 1060891
Effective search space used: 1060891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_013135283.1 ARNIT_RS07395 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.24230.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24230.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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