Alignments for a candidate for asp-kinase in Arcobacter nitrofigilis DSM 7299

Align Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_013135532.1 ARNIT_RS08635 aspartate kinase

Query= SwissProt::A4VJB4
         (412 letters)



>NCBI__GCF_000092245.1:WP_013135532.1
          Length = 402

 Score =  419 bits (1076), Expect = e-121
 Identities = 224/403 (55%), Positives = 295/403 (73%), Gaps = 4/403 (0%)

Query: 3   LIVQKFGGTSVGTVERIEQVAEKVKKFRDGGDDIVVVVSAMSGETNRLIDLAKQISEQPV 62
           L V KFGGTSVGT+ERI+ VA  +KK +D G D++ VVSAMSGETN+LI+ A+  S+ P 
Sbjct: 2   LKVLKFGGTSVGTLERIQNVATIIKKIKDDGHDVIAVVSAMSGETNKLIEYAESYSKMPA 61

Query: 63  PRELDVMVSTGEQVTIALLAMALIKRGVPAVSYTGNQVRILTDSAHTKARILQIDAQRIQ 122
           P E+D+++S+GE+VT ALL++AL + G  A+S +G +  I+TD  HTKARI  ID + ++
Sbjct: 62  PSEMDMLLSSGERVTSALLSIALNEAGYSAISMSGGRAGIVTDERHTKARIEYIDTKNMK 121

Query: 123 RDIKAGRVVVVAGFQGVDEKGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYTTD 182
             I  G+VVVVAGFQGV +KG +TTLGRGGSD T VA+A A++AD C+IYTDVDG+YTTD
Sbjct: 122 ESIAEGKVVVVAGFQGVTQKGRVTTLGRGGSDLTAVAIAGAIEADVCEIYTDVDGIYTTD 181

Query: 183 PRVVAKAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYSVPLRVLHSF-QEGPGTLIT 241
           PR+  KA++LDKI+++EMLE+ASLG+KVLQ R+VE A K +V L    SF  E  GTLIT
Sbjct: 182 PRIEPKAKKLDKISYDEMLELASLGAKVLQNRSVEMAKKLNVNLISRSSFTPEVEGTLIT 241

Query: 242 LDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEVDMIVQNVAHD 301
             EE  MEQPI+SGIA ++++ ++ + GV D PG+A  I   ++ AN+ VDMIVQ VA D
Sbjct: 242 -KEENIMEQPIVSGIALDKNQVRVGMYGVTDRPGIASYIFTALADANINVDMIVQTVAVD 300

Query: 302 NTTDFTFTVHRNDYNNALQVLQGIAAEMGAREAIGDTNIAKVSIVGVGMRSHAGVASRMF 361
             T   FT+   D      ++     E+   +   +  I KVSIVGVGM+SH GVAS+ F
Sbjct: 301 GKTSLDFTIPTTDLEICKTIMHKFEDEVEKFDY--NEKICKVSIVGVGMKSHTGVASKAF 358

Query: 362 EALAKENINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELD 404
            ALA ENINI++ISTSEIK+SV++EEKY ELAVRALH A++LD
Sbjct: 359 TALANENINIRIISTSEIKISVIVEEKYAELAVRALHDAYDLD 401


Lambda     K      H
   0.317    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 462
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 402
Length adjustment: 31
Effective length of query: 381
Effective length of database: 371
Effective search space:   141351
Effective search space used:   141351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_013135532.1 ARNIT_RS08635 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.11622.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11622.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.