Alignments for a candidate for asp-kinase in Arcobacter nitrofigilis DSM 7299

Align Aspartokinase 3; Aspartate kinase 3; Aspartokinase III; EC 2.7.2.4 (characterized)
to candidate WP_013136261.1 ARNIT_RS12310 aspartate kinase

Query= SwissProt::P94417
         (454 letters)



>NCBI__GCF_000092245.1:WP_013136261.1
          Length = 458

 Score =  254 bits (648), Expect = 5e-72
 Identities = 149/455 (32%), Positives = 256/455 (56%), Gaps = 17/455 (3%)

Query: 1   MKVVKFGGSSLASGAQLDKVFHIVTSDPARKAVVVSAPGKHYAEDTKVTDLLIACA---- 56
           +KV KFGGSS+   +Q+ KV  IV  D  R+ +VVSAPG+    D K+TD L+  A    
Sbjct: 3   IKVCKFGGSSVKDASQIKKVLDIVKEDDGRRVIVVSAPGRDDNFDEKITDHLLNVATSGK 62

Query: 57  --EQYLATGSAPELAEAVVERYALIANELQL-GQSIIEKIRDDLF-TLLEGDKSNPEQYL 112
             E++    S  +  +A++++Y  + ++L + G  +I+ +  DL  +LL+G++       
Sbjct: 63  YFEEHFLNISKKQSYDAIIDKYRRLCSDLNVNGDDLIKSLDKDLSNSLLKGERKEA---- 118

Query: 113 DAVKASGEDNNAKLIAAYFRYKGVKAEYVNPKDAGLFVTNEPGNAQVLPESYQNLYRLRE 172
               + GE  NAK+I  YF  +G+  + + P++ G  ++++  + +V   +Y+N+    +
Sbjct: 119 -FFLSRGEHYNAKIIQRYFSNEGLNIKLMLPEEFGFILSDDFRDGKVQKVTYKNIEEKFD 177

Query: 173 --RDGLIIFPGFFGFSKDGDVITFSRSGSDITGSILANGLQADLYENFTDVDAVYSVNPS 230
             +D   + PGF+G +K+ ++   SR GSD+TG  LA  L A+ YEN+TD + VY V+P 
Sbjct: 178 TTKDTKYLVPGFYGVTKNDEIAVMSRGGSDLTGGELAYALDANKYENWTDTNGVYEVDPR 237

Query: 231 FVENPKEISELTYREMRELSYAGFSVFHDEALIPAFRAGIPVQIKNTNNPSAEGTRVVSK 290
            +   K I  LT++E+R LS  GF+VFH  A++   ++ IP+ I+NTNN    GT ++S+
Sbjct: 238 VISGSKVIPRLTFKELRLLSSKGFNVFHFNAMLNCKKSKIPINIRNTNNKEHCGTMILSE 297

Query: 291 RDNTNGPVVGIASDTGFCSIYISKYLMNREIGFGRRALQILEEHGLTYEHVPSGIDDMTI 350
           R      +VGIA      SIY+ K ++  EIGF    L+I  E G+   H P+  DD++I
Sbjct: 298 RVPME-DLVGIAKLDNMASIYLQKDMLADEIGFTAELLKIFSEFGVNTYHYPTDRDDISI 356

Query: 351 ILRQGQMDAATERSVIKRIEEDLHADEVIVEHHLALIMVVGEAMRHNVGTTARAAKALSE 410
           ++ Q  +      ++ + IE+ L  D +IV ++L +I +VG  ++ N      A  AL E
Sbjct: 357 LVEQEDLKGKI-NNLRREIEKRLKTDNIIVSYNLCVITLVGIGLKENTFAIVDAINALKE 415

Query: 411 AQVNIEMINQGSSEVSMMFGVKEAEERKAVQALYQ 445
             ++ +M++   S++S+  GV +     A++ LY+
Sbjct: 416 NNISFDMLDMSPSKISLHIGVSQNIANNALETLYE 450


Lambda     K      H
   0.316    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 486
Number of extensions: 26
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 458
Length adjustment: 33
Effective length of query: 421
Effective length of database: 425
Effective search space:   178925
Effective search space used:   178925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_013136261.1 ARNIT_RS12310 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.13179.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13179.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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