Alignments for a candidate for ilvI in Desulfarculus baarsii DSM 2075

Align acetolactate synthase (subunit 2/2) (EC 2.2.1.6) (characterized)
to candidate WP_013257168.1 DEBA_RS01685 biosynthetic-type acetolactate synthase large subunit

Query= BRENDA::P9WG41
         (618 letters)



>NCBI__GCF_000143965.1:WP_013257168.1
          Length = 582

 Score =  530 bits (1366), Expect = e-155
 Identities = 279/564 (49%), Positives = 368/564 (65%), Gaps = 13/564 (2%)

Query: 40  GAQAVIRSLEELGVDVIFGIPGGAVLPVYDPLFDSKKLRHVLVRHEQGAGHAASGYAHVT 99
           GA AV+ +L   GV++IFG+ GG ++PVYD L       HVLV HEQGA H A GYA  T
Sbjct: 18  GADAVVDALRAQGVELIFGMVGGQIMPVYDALHRHHCFGHVLVGHEQGAAHMAEGYARAT 77

Query: 100 GRVGVCMATSGPGATNLVTPLADAQMDSIPVVAITGQVGRGLIGTDAFQEADISGITMPI 159
           G+ GV M TSGPGATNLVT LADA MDS PVVAITGQV   L+G DAFQEAD+ GITMPI
Sbjct: 78  GKPGVIMTTSGPGATNLVTGLADAFMDSTPVVAITGQVASTLLGNDAFQEADMRGITMPI 137

Query: 160 TKHNFLVRSGDDIPRVLAEAFHIAASGRPGAVLVDIPKDVLQGQCTFSWPPRMELPGYKP 219
           TKHN+ V++ DD+P + AEAF++A SGRPG VL+D+P+DV    C       M   GYKP
Sbjct: 138 TKHNYQVQNADDLPEIFAEAFYVALSGRPGPVLIDLPRDVAVSPCQPRQATPMPPTGYKP 197

Query: 220 NTKPHSRQVREAAKLIAAARKPVLYVGGGVIRGEATEQLRELAELTGIPVVTTLMARGAF 279
             KPH  QV  A  L+A A++PV+  GGGVI   A E LR+LAELTG PV TTLM  G  
Sbjct: 198 PFKPHPLQVERALSLMAQAQRPVIIAGGGVIHAGAHESLRKLAELTGFPVSTTLMGLGGL 257

Query: 280 PDSHRQNLGMPGMHGTVAAVAALQRSDLLIALGTRFDDRVTGKLDSFAPEAKVIHADIDP 339
           P  H  +LGMPGMHGT  A  A+  +DLL+ +G R DDRVTG +  F+P +KVIH D+D 
Sbjct: 258 PADHPLSLGMPGMHGTGYANLAIYNADLLLVVGCRLDDRVTGNVAKFSPGSKVIHVDVDA 317

Query: 340 AEIGKNRHADVPIVGDVKAVITELIAMLRHHHIPGTIEMADWWAYLNGVRKTYPLSYGPQ 399
           +EIGKN    VPIVGD    + +L+A  +    P   +   W   ++  +K YP+ Y P+
Sbjct: 318 SEIGKNLECQVPIVGDAGQALAQLLAGAQAW--PERPDTTAWRKQIDQWKKKYPMVY-PK 374

Query: 400 SDGSLSPEYVIEKLGEIAGPDAVFVAGVGQHQMWAAQFIRYEKPRSWLNSGGLGTMGFAI 459
           SD  ++P++ I+++G++  P+ + V GVGQHQM+ AQ+  + +PR+ ++SGGLGTMGF +
Sbjct: 375 SDDVIAPQWAIQEVGKLLAPEDIVVTGVGQHQMFVAQYYPFRRPRTMISSGGLGTMGFGL 434

Query: 460 PAAMGAKIALPGTEVWAIDGDGCFQMTNQELATCAVEGIPVKVALINNGNLGMVRQWQSL 519
           PAA+GA++  P  +V   DGDG F M  QELAT     +P+   ++NN  LGMV QWQ +
Sbjct: 435 PAAIGAQMGAPERQVVCFDGDGSFLMNIQELATAVRYRVPLVAVVLNNAWLGMVAQWQRM 494

Query: 520 FYAERYSQTDLATHSHRIPDFVKLAEALGCVGLRCEREEDVVD----VINQARAINDCPV 575
           FY  R SQ++ A      P + K+A+A G +G R ER E+ V      + +A+A    PV
Sbjct: 495 FYDRRMSQSETAA-----PPYDKVAQAFGALGKRVERPEEFVPAMQWALREAKA-QKLPV 548

Query: 576 VIDFIVGADAQVWPMVAAGTSNDE 599
           V+D ++  +A+V PMV  G +N E
Sbjct: 549 VLDVMIEREAKVLPMVPPGGANAE 572


Lambda     K      H
   0.319    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1088
Number of extensions: 47
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 582
Length adjustment: 37
Effective length of query: 581
Effective length of database: 545
Effective search space:   316645
Effective search space used:   316645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate WP_013257168.1 DEBA_RS01685 (biosynthetic-type acetolactate synthase large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.10402.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10402.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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