Alignments for a candidate for prs in Desulfarculus baarsii DSM 2075

Align Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PPRibP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 (characterized)
to candidate WP_013257554.1 DEBA_RS03645 ribose-phosphate pyrophosphokinase

Query= SwissProt::P14193
         (317 letters)



>NCBI__GCF_000143965.1:WP_013257554.1
          Length = 313

 Score =  342 bits (876), Expect = 9e-99
 Identities = 172/308 (55%), Positives = 227/308 (73%), Gaps = 1/308 (0%)

Query: 10  LKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPV 69
           LK+F+ NSNP LA+EI   + + L +  V RFSDGE+ + I E++RG D ++IQST  PV
Sbjct: 5   LKVFTGNSNPALAEEICHYLHLPLSQAVVRRFSDGEILVEIGENVRGSDVFVIQSTCPPV 64

Query: 70  NEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGATR 129
           N+H+MELLIM+DA +RASA+ I  VIPYYGYARQDRK   R PI+AKL A+L+ TAGA R
Sbjct: 65  NDHLMELLIMIDAFRRASARRITAVIPYYGYARQDRKVAPRAPISAKLVADLITTAGAGR 124

Query: 130 VIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGKNLEDIVIVSPDHGGVTRARKLADRL 189
           V+ +DLHA QI GFF+IP+DHL   P++ +Y   +   + VIVSPD GGV RAR +A RL
Sbjct: 125 VLCMDLHAGQIGGFFNIPVDHLFATPVILDYLRTQLRGEAVIVSPDAGGVERARAIAKRL 184

Query: 190 KAPIAIIDKRRPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVY 249
            A +AIIDKRR + NVA+ MNI+G ++GK  +++DD+IDTAGT+T AA AL+++GAKEV+
Sbjct: 185 SAGLAIIDKRREKANVAQAMNIIGEVDGKMTVILDDMIDTAGTLTEAARALIDHGAKEVW 244

Query: 250 ACCTHPVLSGPAVERINNSTIKELVVTNSIKLPEE-KKIERFKQLSVGPLLAEAIIRVHE 308
           AC +H VLSGPAV RI  S+I  +V TN++ + EE K   +   LSV  +L EAI R+H 
Sbjct: 245 ACSSHAVLSGPAVTRIKESSITRVVTTNTVPMREEAKNTGKISSLSVAQILGEAIRRIHM 304

Query: 309 QQSVSYLF 316
           + SVS LF
Sbjct: 305 EDSVSSLF 312


Lambda     K      H
   0.319    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 239
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 313
Length adjustment: 27
Effective length of query: 290
Effective length of database: 286
Effective search space:    82940
Effective search space used:    82940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_013257554.1 DEBA_RS03645 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.13787.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13787.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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