Alignments for a candidate for asd in Desulfarculus baarsii DSM 2075

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_013257581.1 DEBA_RS03780 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_000143965.1:WP_013257581.1
          Length = 341

 Score =  350 bits (897), Expect = e-101
 Identities = 183/339 (53%), Positives = 237/339 (69%), Gaps = 9/339 (2%)

Query: 1   MSQQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVE 60
           MS+Q+ VA+ GATGAVG  M++ L+ER+FP+ EL LLASERS GK  ++ G+ + VQ + 
Sbjct: 1   MSKQYRVAVAGATGAVGNQMIQCLEERDFPIGELRLLASERSRGKRLKYKGEDIEVQVLG 60

Query: 61  EFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAE 120
           E  +  V IALFSAGG  S +W+P AA+AG VVIDN++ +R D ++PLVVPEVNP A+A 
Sbjct: 61  EGSFQGVDIALFSAGGGTSLEWSPKAAQAGAVVIDNSAAWRMDPEVPLVVPEVNPHAVAG 120

Query: 121 FRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQ-TAKL 179
           F+ + IIANPNCSTIQM+V LKPI+D  GIER+ V+TYQ+VSG G+  I EL GQ  A  
Sbjct: 121 FKKKGIIANPNCSTIQMVVVLKPIHDLAGIERVVVSTYQAVSGTGQKAIVELQGQLKAIY 180

Query: 180 LNGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRV 239
                 +   +   IA N +P ID F+DNGYTKEEMKMV ET KI  DP+I V+ TCVRV
Sbjct: 181 CQDAQPQAKVYPHVIAQNVLPHIDIFLDNGYTKEEMKMVHETVKIMEDPTIKVSATCVRV 240

Query: 240 PVFYGHAEAVHVETRAPIDAEQVMDMLEQTDGIELFRGADFPT-----QVRDAGGKDHVL 294
           PV YGH+EA ++ T   I A+Q  + L +  G+++    D P         DA G+D  L
Sbjct: 241 PVIYGHSEACNITTARKISAQQAREALAKAPGVKV---VDDPANKLYPMPLDAAGQDLTL 297

Query: 295 VGRVRNDISHHSGINLWVVADNVRKGAATNAVQIAELLV 333
           VGR+R D+S   G++LW+VADN+RKGAA NAVQIAELL+
Sbjct: 298 VGRIREDVSQEKGLDLWLVADNIRKGAAANAVQIAELLI 336


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 319
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 341
Length adjustment: 28
Effective length of query: 309
Effective length of database: 313
Effective search space:    96717
Effective search space used:    96717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_013257581.1 DEBA_RS03780 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.4227.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4227.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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