Alignments for a candidate for asp-kinase in Desulfarculus baarsii DSM 2075

Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_013257768.1 DEBA_RS04735 aspartate kinase

Query= SwissProt::Q88EI9
         (411 letters)



>NCBI__GCF_000143965.1:WP_013257768.1
          Length = 414

 Score =  459 bits (1181), Expect = e-134
 Identities = 234/412 (56%), Positives = 321/412 (77%), Gaps = 2/412 (0%)

Query: 1   MALIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQITDQ 60
           MA+IVQKFGGTSVGSIE+I+ VA KVK   + G+ +VVVLSAM+G T++LI LAK+++ +
Sbjct: 1   MAIIVQKFGGTSVGSIEKIKNVARKVKARADQGNKMVVVLSAMAGVTDKLIALAKEVSPE 60

Query: 61  PVPRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQIDDQK 120
           P  RE+DV+++TGEQ ++AL  +A  + G+PA S  G Q  ILTD+   KARI  ++ Q+
Sbjct: 61  PDAREMDVLLATGEQQSVALFCIAARQMGLPAHSLLGFQAAILTDNVFGKARIKDVEAQR 120

Query: 121 IRADLKEGRVVVVAGFQGVD-EHGSITTLGRGGSDTTGVALAAALKADECQIYTDVDGVY 179
           I   L +G+VVVVAGFQG+D + G +TTLGRGGSDTT VALAAA+KAD C+I+TDVDGVY
Sbjct: 121 ISEMLDQGQVVVVAGFQGLDWDSGDVTTLGRGGSDTTAVALAAAIKADVCEIFTDVDGVY 180

Query: 180 TTDPRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSFKEGPGTL 239
           TTDP +VPQAR+L  I+++EMLEMASLG+KVL+IRSV FA ++ V + V  +F +  GT+
Sbjct: 181 TTDPNIVPQARKLAAISYDEMLEMASLGAKVLEIRSVAFAKQFGVKIHVRSTFTDQEGTM 240

Query: 240 ITIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISASNIEVDMIVQNVA 299
           + + EE+  E+ ++SG+A+N++EA++TI+GV D PGVA K+  PI A+NI VD+I+QN +
Sbjct: 241 V-VSEEQITEKLVVSGVAYNKNEARITIKGVVDQPGVASKVFTPIGAANIVVDVIIQNTS 299

Query: 300 HDNTTDFTFTVHRNEYEKAQSVLENTAREIGAREVIGDTKIAKVSIVGVGMRSHAGVASC 359
            D  TD +FTV + +Y++A  V++ TA+E+GA++VIGD  +AKVSI+G GMR+HAGVA+ 
Sbjct: 300 EDGKTDISFTVPKTDYDQAMRVVQATAKELGAKQVIGDPNVAKVSIIGTGMRNHAGVATK 359

Query: 360 MFEALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLDAPARQGE 411
           MF+ LA E INI+ I+TSEIK+S V++EKY ELAVRALH AF L   A + E
Sbjct: 360 MFQVLAGEGINIETINTSEIKISCVIKEKYTELAVRALHEAFHLAGDAPKAE 411


Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 490
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 414
Length adjustment: 31
Effective length of query: 380
Effective length of database: 383
Effective search space:   145540
Effective search space used:   145540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_013257768.1 DEBA_RS04735 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.9624.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9624.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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