Alignments for a candidate for DAPtransferase in Desulfarculus baarsii DSM 2075

Align LL-diaminopimelate aminotransferase (EC 2.6.1.83) (characterized)
to candidate WP_013258679.1 DEBA_RS09355 LL-diaminopimelate aminotransferase

Query= BRENDA::A0LEA5
         (388 letters)



>NCBI__GCF_000143965.1:WP_013258679.1
          Length = 388

 Score =  503 bits (1294), Expect = e-147
 Identities = 239/386 (61%), Positives = 305/386 (79%)

Query: 1   MAFVKAERLKLLPPYLFQEIDRLKAELTAKGVDVINLGVGDPDLPTPDHIIARLKTAAED 60
           M   +AERL+ LPPYLFQE+DRL+ ++ A+GVD+I+LGVGDPD PTP HII  L  AA+D
Sbjct: 1   MNIERAERLQKLPPYLFQELDRLRDQVRARGVDIIDLGVGDPDQPTPPHIIEALNAAAQD 60

Query: 61  PSTHQYPSYSGMNDFKVSVAGWYKRRFGVELDPLSEVLTLIGSKEGLAHFPLAVINPGDL 120
           P TH+YP+YSG++ F+   A WYKRRF V+L P  EV+TLIGSKEGLAHFPLA +NPGD+
Sbjct: 61  PRTHKYPAYSGLSRFREVAADWYKRRFDVDLIPNQEVITLIGSKEGLAHFPLAFVNPGDV 120

Query: 121 ALVPTPAYPVYHVATMFAGGESYFMPLVRENGFLPDLDSIPADVARRAKVMFINYPNNPT 180
            L P+PAYPVY  +T+ AGG    MPL +ENGFLPDL ++   + ++AKVM INYPNNPT
Sbjct: 121 VLTPSPAYPVYKGSTILAGGVPVEMPLRKENGFLPDLAAMDPALLQKAKVMVINYPNNPT 180

Query: 181 GATAERDFFEKVIAFAREYDVIVCHDAAYTEMAFGGYRPLSFLELPGAGEVGVEFHSLSK 240
            A A+ +F+E+V A A+++++IV  DAAYTEMA+ GYRP SF+++ GA EVG+EFHSLSK
Sbjct: 181 AACADLEFYERVAALAKKHEIIVVSDAAYTEMAYDGYRPPSFMQVAGAREVGIEFHSLSK 240

Query: 241 TYNMTGWRLGFAVGNADILAGLGQVKSNIDSGAFNAVQWAGITALEGDQGCVVEMQRIYK 300
           TYNMTGWR+GFAVGNA ++AGLGQVKS IDSGAF+AVQ AGITAL   Q CV +M ++Y 
Sbjct: 241 TYNMTGWRIGFAVGNAQLVAGLGQVKSQIDSGAFDAVQLAGITALTASQDCVAQMNKLYA 300

Query: 301 ERLDILIEGLKRIGLHPEVPRATFYVWCPTPPGYSSKDFSSLLLREAGIVATPGSGFGAP 360
            R ++L++GL+ +GL  E P+ATFYVWC  P G +S DF   LL EAG+V+TPG GFG+ 
Sbjct: 301 GRREVLVKGLQGLGLEVERPKATFYVWCGVPAGQTSTDFCRKLLEEAGVVSTPGVGFGSA 360

Query: 361 GEGYIRMALTVDKERVREAVERMRKL 386
           GEGY+R ALTVD+ R++EAV+R+  L
Sbjct: 361 GEGYVRFALTVDEARLQEAVDRLAGL 386


Lambda     K      H
   0.321    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 527
Number of extensions: 22
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 388
Length adjustment: 30
Effective length of query: 358
Effective length of database: 358
Effective search space:   128164
Effective search space used:   128164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_013258679.1 DEBA_RS09355 (LL-diaminopimelate aminotransferase)
to HMM TIGR03540 (LL-diaminopimelate aminotransferase (EC 2.6.1.83))

Software error:

../bin/blast/fastacmd -i /tmp/list.19664.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19664.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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