Alignments for a candidate for dapB in Desulfarculus baarsii DSM 2075

Align 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) (characterized)
to candidate WP_013258681.1 DEBA_RS09365 4-hydroxy-tetrahydrodipicolinate reductase

Query= BRENDA::Q9K1F1
         (269 letters)



>NCBI__GCF_000143965.1:WP_013258681.1
          Length = 267

 Score =  223 bits (567), Expect = 4e-63
 Identities = 120/264 (45%), Positives = 158/264 (59%), Gaps = 2/264 (0%)

Query: 5   KIAIAGANGRMGRVLVEAVNNHPDTVLSGALEHSGSEALGLDAGYAVGLKTGIA-ISDDV 63
           +I +AGA GRMG  ++ A+ +     L   LE  G  + G       G+      + DD+
Sbjct: 3   RITVAGAAGRMGNAIIRAIMHDGGGALVAGLEAPGHRSAGKSLAEVCGVADAPGLVFDDI 62

Query: 64  DAVLAQSDVLIDFTRPEPTLKHLQKCVEKQVNIIIGTTGFDDTGKAAIHTAAEKTGIVFA 123
              +AQSDVLIDFT P  ++ +L  C E     +IGTTG D +    +   A KT +VFA
Sbjct: 63  AQAMAQSDVLIDFTSPTASIANLGWCAEAGKACVIGTTGLDLSHDQILRALAAKTPVVFA 122

Query: 124 ANFSVGVNLTFHILDTVARVLNEGYDIEIIEGHHRHKVDAPSGTALRMGEVIAGALGRDL 183
            N SVG+NL F ++  +A+VL   Y +E++E HH  K DAPSGTA+R+ + +  A G D 
Sbjct: 123 PNMSVGMNLMFKLVGQIAQVLGPNYALEVMEAHHDQKKDAPSGTAVRLLKELCAARGWDY 182

Query: 184 KQCAVYGREGHTGPRDPSTIGFATVRAGDIVGDHTALFATDGERVEITHKASSRMTFAAG 243
                +GR G  G R    IG A +R GDIVGDHT  F   GER+E+TH+A SR TFA G
Sbjct: 183 DAVCQHGRCGMVGARPQDQIGVAVIRGGDIVGDHTVFFIGQGERIELTHRAHSRDTFAGG 242

Query: 244 AVRAAVWVNGK-TGLYDMQDVLGL 266
           AVRAA+W++GK  GLYDMQDVLGL
Sbjct: 243 AVRAALWLHGKPAGLYDMQDVLGL 266


Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 220
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 267
Length adjustment: 25
Effective length of query: 244
Effective length of database: 242
Effective search space:    59048
Effective search space used:    59048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_013258681.1 DEBA_RS09365 (4-hydroxy-tetrahydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.19594.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19594.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.