Alignments for a candidate for argG in Desulfarculus baarsii DSM 2075

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_013258687.1 DEBA_RS09395 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000143965.1:WP_013258687.1
          Length = 404

 Score =  533 bits (1372), Expect = e-156
 Identities = 255/393 (64%), Positives = 313/393 (79%)

Query: 3   IVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLK 62
           IVLAYSGGLDTSIILKWL+ETY  +VIAF AD+GQGEE+E  REKA++TGASK    DL+
Sbjct: 8   IVLAYSGGLDTSIILKWLQETYDCQVIAFAADLGQGEELEPVREKAIKTGASKVFIDDLR 67

Query: 63  EEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQ 122
           EEF RD+VFPM RA A+YE  YLLGTSIARPLIAK  + IA  E A+A+AHGATGKGNDQ
Sbjct: 68  EEFARDYVFPMFRANAIYESVYLLGTSIARPLIAKRQIEIALAENADAVAHGATGKGNDQ 127

Query: 123 VRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLHIS 182
           VRFEL   AL P +++IAPWR W    R+ +IAYA+ HGIPVPVT+ KPYS D NLLHIS
Sbjct: 128 VRFELAYQALAPQVRIIAPWRIWDLNSRESLIAYAQKHGIPVPVTKAKPYSSDRNLLHIS 187

Query: 183 YEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQRL 242
           +EGG+LEDPWAEPP+ M+ ++  P++APD  E + ++F  GD VA++G++LSPAA+L RL
Sbjct: 188 FEGGILEDPWAEPPEDMYVLSVSPKDAPDQAEEITLDFEAGDAVAIDGQKLSPAAMLARL 247

Query: 243 NEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDMLS 302
           NE+GG+HGVGRVD+VENR+VGMKSRGVYETPGGTIL  AR A+ESLTLDREVL  RD L+
Sbjct: 248 NELGGKHGVGRVDLVENRYVGMKSRGVYETPGGTILRQARLAMESLTLDREVLRLRDNLA 307

Query: 303 PKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQDL 362
           PKYAE+VYYG+W++PER  LQ+  D  A  V G  RLKLYKGNV + GR++P SLYR D 
Sbjct: 308 PKYAEMVYYGYWFSPERALLQSLMDQAAAPVCGQVRLKLYKGNVTISGRRSPGSLYRPDF 367

Query: 363 VSFDEAGGYDQKDAEGFIKIQALRLRVRALVER 395
            +F+    Y+Q DA GFI++  LRLR+R  +++
Sbjct: 368 ATFEADTVYNQADATGFIRLNGLRLRIRHALDQ 400


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 524
Number of extensions: 20
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 404
Length adjustment: 31
Effective length of query: 369
Effective length of database: 373
Effective search space:   137637
Effective search space used:   137637
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_013258687.1 DEBA_RS09395 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.8747.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8747.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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