Alignments for a candidate for argI in Desulfarculus baarsii DSM 2075

Align Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate WP_013258688.1 DEBA_RS09400 ornithine carbamoyltransferase

Query= SwissProt::P11724
         (305 letters)



>NCBI__GCF_000143965.1:WP_013258688.1
          Length = 309

 Score =  315 bits (808), Expect = 7e-91
 Identities = 149/302 (49%), Positives = 213/302 (70%), Gaps = 3/302 (0%)

Query: 1   MSVRHFLSFMDYSPEELIGLIRRGSELKDLRNRGVLYEPLKSRVLGMVFEKASTRTRLSF 60
           ++ +H L+  D + +E++GLI R  +LK     G    PL  + + M+FEK STRTR+SF
Sbjct: 4   LTTKHLLTIRDLTAQEVLGLIERARQLKAGWRGGYRPTPLAGKSVAMIFEKPSTRTRVSF 63

Query: 61  EAGMIQLGGQAIFLSPRDTQLGRGEPIGDSARVMSRMLDGVMIRTFAHATLTEFAAHSKV 120
           E G+ QLGG+A+F++ RD+Q+ R EP+ D+ARV+SR +DG+++RTF H  + + A    V
Sbjct: 64  EVGVFQLGGKALFIASRDSQISRSEPLRDTARVLSRYVDGIVVRTFGHEVVEDLARFGDV 123

Query: 121 PVINGLSDDLHPCQLLADMQTFHEHRGSIQGKTVAWIGDGNNMCNSYIEAALKFDFQLRV 180
           PVIN L+D  HPCQ+L D+QT  E++G ++ +  AWIGDGNNM +S+IEAA     +LR+
Sbjct: 124 PVINALTDRYHPCQVLGDLQTVAEYKGEVRDQVYAWIGDGNNMAHSWIEAAAVLGLRLRL 183

Query: 181 ACPEGYEPKAEFVALA---GDRLRVVRDPREAVAGAHLVSTDVWASMGQEDEAAARIALF 237
           ACPEGY+P  E VA A   G  + + R+P EA +GA +++TDVWASMGQEDEA  R   F
Sbjct: 184 ACPEGYDPDPEIVAQARARGADILLTREPDEAASGATVINTDVWASMGQEDEAKGRAEAF 243

Query: 238 RPYQVNAALLDGAADDVLFMHCLPAHRGEEISEELLDDPRSVAWDQAENRLHAQKALLEL 297
             + V+  L+  AA + + +HCLPAHRGEEIS+E+++ P+S  WD+AENRLH QKA++E 
Sbjct: 244 GGFTVDGRLMSLAAREAIVLHCLPAHRGEEISDEVMEGPQSAIWDEAENRLHMQKAIMEA 303

Query: 298 LI 299
           L+
Sbjct: 304 LL 305


Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 272
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 309
Length adjustment: 27
Effective length of query: 278
Effective length of database: 282
Effective search space:    78396
Effective search space used:    78396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_013258688.1 DEBA_RS09400 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.30556.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30556.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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