Alignments for a candidate for argB in Desulfarculus baarsii DSM 2075

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_013258690.1 DEBA_RS09410 acetylglutamate kinase

Query= BRENDA::Q9HTN2
         (301 letters)



>NCBI__GCF_000143965.1:WP_013258690.1
          Length = 296

 Score =  325 bits (833), Expect = 8e-94
 Identities = 167/286 (58%), Positives = 212/286 (74%)

Query: 13  KVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQI 72
           + L EALPYI RF G+T+VIKYGG+AM+ E LK  FA +V+L++AVGI PVVVHGGGPQI
Sbjct: 11  RTLIEALPYINRFAGQTVVIKYGGHAMKDEALKKSFALNVILLRAVGIYPVVVHGGGPQI 70

Query: 73  GDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAE 132
           G LL RLSI+  F+DGMRVT    M+VV+MVL GQVN  IV LIN +GG A+GL G D  
Sbjct: 71  GQLLDRLSIDCRFVDGMRVTSPEVMNVVQMVLVGQVNTGIVGLINANGGRAVGLNGHDGG 130

Query: 133 LIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGE 192
           LI+A ++T+ R+T     PEI+D+G VG+V  VN  +L+ L  G+FIPVIAP+GVG  GE
Sbjct: 131 LIQASRMTLQRETGHDQPPEIVDLGLVGKVDKVNPQVLHSLEHGNFIPVIAPVGVGPEGE 190

Query: 193 SYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYGGM 252
           S NINADLVA  VA  L+A KL+LLT+  G+MD  G++L  L+ ++   L   G I GGM
Sbjct: 191 SLNINADLVASAVAAGLRASKLILLTDTPGVMDAGGKLLHELTAKEAKLLQGQGVITGGM 250

Query: 253 LPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 298
           +PK+ C L+A++ GV  AHIIDGRV NA+LLEIF+D GVGT+ S+R
Sbjct: 251 IPKVNCCLQALERGVERAHIIDGRVANALLLEIFSDQGVGTIFSDR 296


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 329
Number of extensions: 20
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 296
Length adjustment: 27
Effective length of query: 274
Effective length of database: 269
Effective search space:    73706
Effective search space used:    73706
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_013258690.1 DEBA_RS09410 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.29293.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29293.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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