Alignments for a candidate for asp-kinase in Rhodomicrobium vannielii ATCC 17100

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_013420319.1 RVAN_RS13760 aspartate kinase

Query= BRENDA::O69077
         (412 letters)



>NCBI__GCF_000166055.1:WP_013420319.1
          Length = 418

 Score =  392 bits (1006), Expect = e-113
 Identities = 220/417 (52%), Positives = 285/417 (68%), Gaps = 16/417 (3%)

Query: 3   LIVQKFGGTSVGTVERIEQVAEKVKKFREAGDDVVVVVSAMSGETNRLIGLANQIMEQPV 62
           L+V KFGGTSV  + RI   A  VK+  EAG+ V VVVSAM+G TN+L+G   +  E   
Sbjct: 2   LLVMKFGGTSVADIARIRNSALHVKREVEAGNRVAVVVSAMAGHTNQLVGWCKEAHELYD 61

Query: 63  PRELDVMVSTGEQVTIALLSMALIKRGVPAVSYTGNQVRILTDSAHTKARILHIDDTHIR 122
            RE D +VS+GEQVT  L+++ L   GV A S+ G Q+ ++TD +H+ ARI  ++   + 
Sbjct: 62  LREYDAVVSSGEQVTAGLMAIILQSIGVKARSWQGWQIPLVTDGSHSVARIDRLETADLL 121

Query: 123 ADLKAGRVVVVAGFQGVDGNGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYTTD 182
           A ++ G V VVAGFQG+  +G ITTLGRGGSDT+ VALAAALKA+ C IYTDVDGVYTTD
Sbjct: 122 ASVEGGEVAVVAGFQGIAPSGRITTLGRGGSDTSAVALAAALKAERCDIYTDVDGVYTTD 181

Query: 183 PRVVPQARRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYNVPLRVLHSF---------- 232
           PR+VP ARRL +I++EEMLEMASLG+KVLQ R+VE A    V ++V  SF          
Sbjct: 182 PRLVPDARRLPRISYEEMLEMASLGAKVLQTRSVELAMAQGVRVQVRSSFDNPESCEPAR 241

Query: 233 ---QEGPGTLITIDDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAAN 289
               E  GTL+   DE E +E  ++SGIA+ +DEAK+T+  + D PGVA  I  P+S AN
Sbjct: 242 SGISEMCGTLVC--DETEMLEHHVVSGIAYAKDEAKVTVLSIEDKPGVAASIFVPLSEAN 299

Query: 290 VEVDMIVQNVAHD-NTTDFTFTVHRNDYLNALEILKQTAANIGAREAIGDTNIAKVSIVG 348
           + VDMIVQN++ D   TD TFTV   +   AL++L+     I  R+  GDT++ KVS++G
Sbjct: 300 INVDMIVQNISEDGRKTDLTFTVAAAELPRALQVLRDNQDTIRYRDLRGDTDMVKVSVIG 359

Query: 349 VGMRSHAGVASRMFEALAKESINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELD 405
           VGMRSHAGVA+ MF+ALA +SINIQ ISTSEIK+SV+I   + E AV  LH+ F LD
Sbjct: 360 VGMRSHAGVAAEMFQALAGKSINIQAISTSEIKISVLIGAAHTEEAVNTLHSLFGLD 416


Lambda     K      H
   0.317    0.133    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 423
Number of extensions: 19
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 418
Length adjustment: 31
Effective length of query: 381
Effective length of database: 387
Effective search space:   147447
Effective search space used:   147447
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_013420319.1 RVAN_RS13760 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.20680.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20680.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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