Alignments for a candidate for argI in Calditerrivibrio nitroreducens DSM 19672

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_013450866.1 CALNI_RS03710 ornithine carbamoyltransferase

Query= BRENDA::O93656
         (317 letters)



>NCBI__GCF_000183405.1:WP_013450866.1
          Length = 312

 Score =  327 bits (838), Expect = 2e-94
 Identities = 169/304 (55%), Positives = 223/304 (73%), Gaps = 4/304 (1%)

Query: 8   RDLLCLQDYTPEEIWTILETA-KMLKIWQKIGKPHRLLEGKTLAMIFQKPSTRTRVSFEV 66
           +D L L+DY  + +  +++ A KM K     G+   +L+ KT+A+IF+K STRTRVSFEV
Sbjct: 3   KDFLTLRDYDSDTLKKLVQLAIKMKKERLTFGRD--ILKNKTVALIFEKSSTRTRVSFEV 60

Query: 67  AMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYASVPV 126
            +  +GG+ L+L+  D+QL RGETI DTAR LSRYVD IM R ++H  VE LAKY+SVPV
Sbjct: 61  GVYDMGGYPLFLSKNDIQLGRGETIEDTARTLSRYVDMIMIRTFEHSKVEKLAKYSSVPV 120

Query: 127 INGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVAT 186
           INGL+D  HPCQ +AD MT++EK GT   +K+ YVGDGNN+AHSLMI  +K G D  +AT
Sbjct: 121 INGLTDDFHPCQVMADIMTVYEKFGTYD-LKLAYVGDGNNMAHSLMIGCSKFGIDFSIAT 179

Query: 187 PEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRK 246
           P+GYEP  +V+ +A   A ++G +    +DP +AV+ AD+IYTDVW SMGQEAE E R K
Sbjct: 180 PKGYEPKFEVLNYAMDVARKNGKTIHFNNDPYEAVRGADIIYTDVWTSMGQEAENEIRLK 239

Query: 247 IFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPNSVVWDEAENRLHAQKAVL 306
            F+ +QV+ +L+K       FMHCLPAHRGEEV+DDVI+S  S+V+DEAENRLHAQKA++
Sbjct: 240 AFQGYQVDMELLKATGKKTYFMHCLPAHRGEEVSDDVIESEFSIVFDEAENRLHAQKAIM 299

Query: 307 ALLL 310
           A L+
Sbjct: 300 AYLI 303


Lambda     K      H
   0.319    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 286
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 312
Length adjustment: 27
Effective length of query: 290
Effective length of database: 285
Effective search space:    82650
Effective search space used:    82650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_013450866.1 CALNI_RS03710 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.3492.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3492.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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