Alignments for a candidate for ilvI in Calditerrivibrio nitroreducens DSM 19672

Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate WP_013450956.1 CALNI_RS04160 biosynthetic-type acetolactate synthase large subunit

Query= metacyc::MONOMER-18810
         (585 letters)



>NCBI__GCF_000183405.1:WP_013450956.1
          Length = 565

 Score =  595 bits (1534), Expect = e-174
 Identities = 303/565 (53%), Positives = 390/565 (69%), Gaps = 10/565 (1%)

Query: 21  GAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQAAVHAADGYARAT 80
           GAEILV  L +  V+ ++GYPGG +L+IYD L   +   H+L RHEQ  +HAADGYAR+T
Sbjct: 5   GAEILVECLKKHKVDLIFGYPGGVLLHIYDRLF-DSDILHVLPRHEQGGIHAADGYARST 63

Query: 81  GKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAFQECDTVGITRPI 140
           GKVGV   TSGPG TN VTGIATAYLDS+P+VV TG V TH IG DAFQE D VGITRPI
Sbjct: 64  GKVGVCFGTSGPGATNLVTGIATAYLDSVPLVVFTGQVSTHLIGGDAFQEADIVGITRPI 123

Query: 141 VKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDV----SRNACKYEYPKSIDMR 196
           VKH++LVKDV DLA TI +AF++A TGRPGPV+VD+PKDV    S+N C  +    I + 
Sbjct: 124 VKHSYLVKDVDDLAPTIAEAFYLAKTGRPGPVLVDLPKDVIAAKSKNLCSTD----IKLV 179

Query: 197 SYNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLANASDELRQLAALTGHPVTNTLMG 256
            YNP  +GH  QI+K + +L+ A+ P +  GGGV  +NA +EL++       PV ++LMG
Sbjct: 180 GYNPTYEGHPMQIKKMLKMLENAKAPVVLIGGGVKWSNAHEELKKFVETLNLPVVSSLMG 239

Query: 257 LGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHFTSQARKIIH 316
           +GAFP   K +VG  GMHG Y +NMA+   D ++AIG RF DR  G    +  +A+K   
Sbjct: 240 IGAFPNPHKNWVGWAGMHGNYASNMALTEADFILAIGTRFSDRTTGRLDAYAPKAKK-AQ 298

Query: 317 IDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQIEQWRSVDC 376
           IDIDP+SI K VKVD PIVG+ K VL +++  IK  +    +     W ++IE W +   
Sbjct: 299 IDIDPTSIDKNVKVDTPIVGDCKTVLNQILNYIKDFNWDKCKNDREDWLKKIEYWDNERP 358

Query: 377 LKYDRSSEIIKPQYVVEKIWELTKGDAFICSDVGQHQMWAAQFYKFDEPRRWINSGGLGT 436
             Y  S +IIKPQ+VVEKI+E+T GDA I ++VGQ+QMWAAQFYKF +PR++I SGGLGT
Sbjct: 359 FSYKFSDKIIKPQFVVEKIYEVTNGDAIITTEVGQNQMWAAQFYKFKDPRQFITSGGLGT 418

Query: 437 MGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKICSLNNGYLGMVR 496
           MG G P A+G K   P +EV  I G+GS  M +QEL T +QY   VK+  LNN +LGM+R
Sbjct: 419 MGYGFPAAIGAKLGNPNREVFDIAGDGSFLMNMQELCTAVQYRVGVKVAILNNKFLGMIR 478

Query: 497 QWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEPALREAFRLKDRTVFLD 556
           QWQ + Y+ RYS+S ++  PDFVKLA+AYG VG +V   SDVEP LRE+ ++KD+ V  D
Sbjct: 479 QWQHLFYNKRYSYSCLECQPDFVKLADAYGCVGFQVANPSDVEPVLRESLKIKDKPVLFD 538

Query: 557 FQTDPTENVWPMVQAGKGISEMLLG 581
           F  D  ENV+PMV AG  ++EM+ G
Sbjct: 539 FLVDREENVYPMVPAGAALNEMIYG 563


Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 951
Number of extensions: 35
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 565
Length adjustment: 36
Effective length of query: 549
Effective length of database: 529
Effective search space:   290421
Effective search space used:   290421
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate WP_013450956.1 CALNI_RS04160 (biosynthetic-type acetolactate synthase large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.21800.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21800.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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