Alignments for a candidate for ilvE in Calditerrivibrio nitroreducens DSM 19672

Align Branched-chain-amino-acid aminotransferase 2; BCAT 2; Vegetative protein 85; VEG85; EC 2.6.1.42 (characterized)
to candidate WP_013451085.1 CALNI_RS04810 branched-chain amino acid aminotransferase

Query= SwissProt::P39576
         (363 letters)



>NCBI__GCF_000183405.1:WP_013451085.1
          Length = 364

 Score =  286 bits (731), Expect = 8e-82
 Identities = 154/343 (44%), Positives = 217/343 (63%), Gaps = 6/343 (1%)

Query: 17  KPDPNQLSFGRVFTDHMFVMDYAADKGWYDPRIIPYQPLSMDPAAMVYHYGQTVFEGLKA 76
           KP+   L FG++ TDHMF+MD+  ++ WY  +I PYQ +++ P A+  HYGQ  FEG KA
Sbjct: 19  KPEQT-LPFGQLRTDHMFMMDFDGNE-WYGIKICPYQDINIAPGAIALHYGQAYFEGAKA 76

Query: 77  YVSEDDHVLLFRPEKNMERLNQSNDRLCIPQIDEEQVLEGLKQLVAIDKDWIPNAEGTSL 136
           ++  D  +  FR +KN ER N S + LC+P++D E  ++ +  L+ +D++W P  EG SL
Sbjct: 77  FMHPDGEIYTFRLDKNAERANFSAEILCMPKVDVEFQIKAIHALIDVDRNWFPLQEGASL 136

Query: 137 YIRPFIIATEPFLGVAASHTYKLLIILSPVGSYYKEGI-KPVKIAVESEFVRAVKGGTGN 195
           YIRPF+  T   LGV  S +Y+ ++ILSP G YY  G  KP+++ +  +F RAV GGTG 
Sbjct: 137 YIRPFMFGTSDSLGVHPSESYRYMVILSPSGPYYPTGFTKPIRLLITQKFHRAVSGGTGA 196

Query: 196 AKTAGNYASSLKAQQVAEEKGFSQVLWLDGIEKKYIEEVGSMNIF-FKINGEIVTPMLNG 254
           AK AGNYA+SL+A Q A++ G SQVL+LD    +YIEE G+MN F    +G +  P    
Sbjct: 197 AKAAGNYAASLRAGQFAKKFGASQVLYLDA-NNQYIEEAGAMNHFHITKDGTVFIPEFTD 255

Query: 255 SILEGITRNSVIALLKHWGLQVSERKIAIDEVIQAHKDGILEEAFGTGTAAVISPVGELI 314
           +IL+ IT  S+I LL   G +V +++I + E I   K G + EA G GTAAV+SPVGE +
Sbjct: 256 TILKSITSLSMIELLPSLGFKVVQKRIELAEFIDGVKSGDIVEAGGFGTAAVVSPVGEYV 315

Query: 315 WQD-ETLSINNGETGEIAKKLYDTITGIQKGAVADEFGWTTEV 356
           ++D   L + NGE GE+ KK+Y   T IQ G      GW  +V
Sbjct: 316 FEDGSVLKVGNGEIGEMTKKIYKAYTDIQYGRSKAPDGWLRKV 358


Lambda     K      H
   0.316    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 384
Number of extensions: 16
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 364
Length adjustment: 29
Effective length of query: 334
Effective length of database: 335
Effective search space:   111890
Effective search space used:   111890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_013451085.1 CALNI_RS04810 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.18047.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18047.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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