Alignments for a candidate for trpD_1 in Calditerrivibrio nitroreducens DSM 19672

Align Anthranilate synthase component 2; AS; ASII; EC 4.1.3.27; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component (uncharacterized)
to candidate WP_013451102.1 CALNI_RS04890 aminodeoxychorismate/anthranilate synthase component II

Query= curated2:Q02003
         (198 letters)



>NCBI__GCF_000183405.1:WP_013451102.1
          Length = 196

 Score =  131 bits (329), Expect = 9e-36
 Identities = 71/187 (37%), Positives = 107/187 (57%), Gaps = 8/187 (4%)

Query: 1   MILIIDNYDSFTYNL-VQYVGVLTDVAVVKNDDDSLGNMAEKADALIFSPGPGWPADAGK 59
           M L+IDNYDSFTYNL   +  V   V V+KND+      A+    +I SPGP  P ++G 
Sbjct: 1   MYLLIDNYDSFTYNLKALFESVGAKVYVIKNDEYI---DADSFKGIILSPGPSNPENSGT 57

Query: 60  METLIQQFAGQKPILGICLGFQAIVEVFGGKLRLAHQVMHGKNSQVRQTSGNLIFNHLPS 119
               +Q +  +KP  G+CLG QAI    G   R A  +MHGK  ++     +++F   P 
Sbjct: 58  TLKYLQLYTDKKPFFGVCLGMQAICYSLGYNFRKAKSIMHGKIDKIVIKKKDVLFKDFPD 117

Query: 120 KFLVMRYHSIVMDEAVALPDFAITAVATDDGEIMAIENEKEQIYGLQFHPESIGTLDGMT 179
           +   +RYHS+VMD    +P+  IT+++T D E M+ E     ++G+QFHPES  +  G  
Sbjct: 118 EINAVRYHSLVMD----IPEKYITSISTSDNEAMSFEMPDRMLFGVQFHPESYLSEYGAI 173

Query: 180 MIENFVN 186
           +++NF++
Sbjct: 174 LVKNFID 180


Lambda     K      H
   0.318    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 114
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 196
Length adjustment: 20
Effective length of query: 178
Effective length of database: 176
Effective search space:    31328
Effective search space used:    31328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate WP_013451102.1 CALNI_RS04890 (aminodeoxychorismate/anthranilate synthase component II)
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.22240.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22240.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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