Alignments for a candidate for leuB in Calditerrivibrio nitroreducens DSM 19672

Align β-isopropylmalate dehydrogenase subunit (EC 1.1.1.85) (characterized)
to candidate WP_013451367.1 CALNI_RS06250 3-isopropylmalate dehydrogenase

Query= metacyc::MONOMER-11898
         (358 letters)



>NCBI__GCF_000183405.1:WP_013451367.1
          Length = 358

 Score =  443 bits (1140), Expect = e-129
 Identities = 229/353 (64%), Positives = 269/353 (76%), Gaps = 4/353 (1%)

Query: 1   MKNVAVLSGDGIGPEVMEIAISVLKKALGAKVSEFQFKEGFVGGIAIDKTGHPLPPETLK 60
           M  VAVL GDGIGPEVM  A+ +LKK       +F  K   VGGIAID  G PLP  TLK
Sbjct: 1   MFKVAVLPGDGIGPEVMAQAMKILKKIEKKYSVKFDCKFSDVGGIAIDNYGEPLPQHTLK 60

Query: 61  LCEESSAILFGSVGGPKWETLPPEKQPERGALLPLRKHFDLFANLRPAIIYPELKNASPV 120
           LCEES AILFGSVGGPKWE LPPEKQPERGALLPLRKHF+LF N+RP  +YP LK +  +
Sbjct: 61  LCEESDAILFGSVGGPKWENLPPEKQPERGALLPLRKHFNLFVNIRPVKVYPALKESCSL 120

Query: 121 RSDIIGNGLDILILRELTGGIYFGQPKGREGSGQEEFAYDTMKYSRREIERIAKVAFQAA 180
           +   I  GLDI+ILRELTGGIYFGQPK    S    +A DTMKY+  EI+RIAKVAF+ A
Sbjct: 121 KDKFIQQGLDIVILRELTGGIYFGQPKYI--SEDRNYAVDTMKYTVEEIKRIAKVAFETA 178

Query: 181 RKRNNKVTSIDKANVLTTSVFWKEVVIELHKKEFSDVQLNHLYVDNAAMQLIVNPKQFDV 240
           R R   VTS+DKANVL TSV W+E+V EL +K++ D++LNH+YVDNAAMQL+ NP QFDV
Sbjct: 179 RLRKKIVTSVDKANVLMTSVLWREIVTELWEKDYPDIKLNHMYVDNAAMQLVRNPSQFDV 238

Query: 241 VLCENMFGDILSDEASIITGSIGMLPSASLSESGFGLYEPSGGSAPDIAGKGVANPIAQV 300
           +L ENMFGDILSDEA+++TGS+GMLPSASL+E GFGLYEP GG+APDIAG+ +ANP AQ+
Sbjct: 239 ILTENMFGDILSDEAAMLTGSLGMLPSASLNERGFGLYEPIGGTAPDIAGQNIANPTAQI 298

Query: 301 LSAALMLRYSFSMEEEANKIETAVRKTIASGKRTRDI--AEVGSTIVGTKEIG 351
           LSAALMLRYSF M++ A  IE A+   IA G RT DI   + G+  V T+E G
Sbjct: 299 LSAALMLRYSFKMDDAARDIENALENLIAKGARTSDIFYGDPGTYKVSTEEFG 351


Lambda     K      H
   0.316    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 431
Number of extensions: 19
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 358
Length adjustment: 29
Effective length of query: 329
Effective length of database: 329
Effective search space:   108241
Effective search space used:   108241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_013451367.1 CALNI_RS06250 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.22061.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22061.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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