Alignments for a candidate for glnA in Calditerrivibrio nitroreducens DSM 19672

Align Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 (characterized)
to candidate WP_013451704.1 CALNI_RS08000 type I glutamate--ammonia ligase

Query= SwissProt::P77961
         (473 letters)



>NCBI__GCF_000183405.1:WP_013451704.1
          Length = 470

 Score =  635 bits (1638), Expect = 0.0
 Identities = 295/470 (62%), Positives = 366/470 (77%), Gaps = 1/470 (0%)

Query: 4   TPQEVLKWIQDENIKIIDLKFIDTPGIWQHCSFYYDQLDENSFTEGIPFDGSSIRGWKAI 63
           TP+EVLK I+++NIK +DL+F+D  G+WQHCS+     DE++F +G+ FDGSSIRGW+AI
Sbjct: 2   TPKEVLKLIEEQNIKFVDLRFVDFFGLWQHCSYPVSMFDEDTFEDGLGFDGSSIRGWQAI 61

Query: 64  NESDMCMVPDPNTATIDPFCKEPTLSMICSIKEPRTGEWYNRDPRTIAAKAVEYLRGTGI 123
           N SDM ++PDP TA IDPF + PTL M+C I +P T E Y+RDPR IA KA  YL+GTGI
Sbjct: 62  NNSDMLIIPDPTTAKIDPFTQVPTLIMLCKIVDPITKEPYSRDPRNIAIKATNYLKGTGI 121

Query: 124 ADTVYFGPEAEFFLFDDIRFGQTENSSYYFADSVEGRWNTGREEEGGNLGYKPGYKQGYF 183
           ADT +FGPE EFF+FDD+R+  T N S+Y  DS+EG WNTGR+E   NLGYK  +K+GYF
Sbjct: 122 ADTAFFGPEPEFFIFDDVRYACTPNESFYSFDSIEGIWNTGRDE-APNLGYKIRHKEGYF 180

Query: 184 PVAPTDTAQDIRTEMLLTMAGLCVPIEKHHHEVASGGQNELGIKFDKLVNSADNLMIYKY 243
           PV P D+  D+R EM L +  L + +E HHHEVAS GQ E+ IKF  LV+ ADNLM YKY
Sbjct: 181 PVPPHDSLMDLRAEMALALMKLGIEVEAHHHEVASAGQVEIDIKFAPLVDQADNLMFYKY 240

Query: 244 VIKNVAKKYGKTVTFMPKPIFNDNGSGMHVHQSLWKDGQPLFAGDKYAGFSQMGLWYIGG 303
            +KNVAK + K VTFMPKP+F DNGSG+H HQSLWKDG+PLFAGD+YAG S++ L+YIGG
Sbjct: 241 AVKNVAKLHNKVVTFMPKPMFGDNGSGLHCHQSLWKDGKPLFAGDEYAGLSELALYYIGG 300

Query: 304 ILKHAPALLAFTNPTTNSYKRLVPGFEAPVNLAYSQGNRSASVRIPLSGGNPKAKRLEFR 363
           I+KHA A+ AFTNP TNSYKRLVPG+EAPVNLAYS  NRSAS+RIP+   +PK+KR+E R
Sbjct: 301 IIKHAKAIAAFTNPITNSYKRLVPGYEAPVNLAYSSRNRSASIRIPMYSASPKSKRIEVR 360

Query: 364 CPDATSNPYLAFAAMLCAGIDGIKNQIDPGEPLDVDIYDLSPEELAKIPSTPGSLEAALE 423
            PD + NPYLAF AML AG+DGI+N+IDPGEP+D ++YDL P EL+ IP  PGSLE AL+
Sbjct: 361 FPDPSCNPYLAFTAMLMAGLDGIENKIDPGEPMDKNLYDLDPIELSNIPKMPGSLEEALD 420

Query: 424 ALEKDHEFLTGTGVFSPDFVESWIEYKLDNEVNPMRLRPHPYEFSLYYDC 473
           +LEKDHEFL    VF+ D + +WI YK  NEV  + ++PHP EF LY+DC
Sbjct: 421 SLEKDHEFLLKGDVFTEDVISTWIAYKRQNEVAAVNMKPHPMEFMLYFDC 470


Lambda     K      H
   0.318    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 836
Number of extensions: 41
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 470
Length adjustment: 33
Effective length of query: 440
Effective length of database: 437
Effective search space:   192280
Effective search space used:   192280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_013451704.1 CALNI_RS08000 (type I glutamate--ammonia ligase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.5766.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5766.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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