Alignments for a candidate for leuC in Calditerrivibrio nitroreducens DSM 19672

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate WP_013452135.1 CALNI_RS10295 3-isopropylmalate dehydratase large subunit

Query= CharProtDB::CH_024771
         (466 letters)



>NCBI__GCF_000183405.1:WP_013452135.1
          Length = 463

 Score =  483 bits (1243), Expect = e-141
 Identities = 248/466 (53%), Positives = 313/466 (67%), Gaps = 8/466 (1%)

Query: 1   MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFAT 60
           M K L+ K++  H V +       L+I  HL+HEVTSPQAF  LR  G  V  P +TFAT
Sbjct: 1   MGKNLFNKVWQLHEVAKLPGGRTQLFIGLHLIHEVTSPQAFSMLRELGLKVLFPERTFAT 60

Query: 61  MDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLP 120
            DH + T          +A   MQ + KN KEFG++ +     YQG+VH++GPE G+T P
Sbjct: 61  CDHIIPTDDIKRPFADPLAEEMMQAIEKNTKEFGIKFFSPETGYQGVVHIVGPELGLTQP 120

Query: 121 GMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITA 180
           G+T+ CGDSHTATHGAFGA+AFGIGTS+V  VLATQT+     K  KI+++G  + G+ +
Sbjct: 121 GITVACGDSHTATHGAFGAIAFGIGTSQVRDVLATQTMALNSFKVRKIDLKGSLSKGVYS 180

Query: 181 KDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTF 240
           KDI+L II K G  GG G+  EF GE I+ LSME RMT+CNMAIE GA+ G + PDETT+
Sbjct: 181 KDIILHIIRKLGVNGGIGYAYEFAGEVIKGLSMEARMTICNMAIEGGARVGYINPDETTY 240

Query: 241 NYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISV 300
            Y+KG+ +APKG D+D+ + YW+++++D  A +D VV +    + P VTWG NP Q I +
Sbjct: 241 EYLKGKPYAPKGADWDERIKYWESIKSDPDAEYDDVVEIDISSLEPMVTWGINPEQCIGI 300

Query: 301 NDNIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAE 360
           +++IP+  S        S  +AL YM  KPG  +    ID VFIGSCTN R+EDLR AA 
Sbjct: 301 SESIPEDNS-------DSVREALEYMKFKPGQKIKGTKIDVVFIGSCTNGRLEDLREAAM 353

Query: 361 IAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNP 420
             KG KVA GV+A+VVPGS  +K QAEAEGLDKIFIEAGFEWRLPGCSMCLAMN D+L  
Sbjct: 354 FLKGHKVAKGVKAIVVPGSYTIKKQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNPDKLVG 413

Query: 421 GERCASTSNRNFEGRQGRG-GRTHLVSPAMAAAAAVTGHFADIRNI 465
            +   STSNRNF+GRQG   GRT L SP  AAA+A+ G  AD R I
Sbjct: 414 DQISVSTSNRNFKGRQGSSTGRTILASPLTAAASAIAGAVADPREI 459


Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 647
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 463
Length adjustment: 33
Effective length of query: 433
Effective length of database: 430
Effective search space:   186190
Effective search space used:   186190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_013452135.1 CALNI_RS10295 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.15109.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15109.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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