Alignments for a candidate for thrB in Sulfuricurvum kujiense DSM 16994

Align Homoserine kinase; HK; HSK; EC 2.7.1.39 (uncharacterized)
to candidate WP_013459322.1 SULKU_RS02335 homoserine kinase

Query= curated2:A6QBQ7
         (292 letters)



>NCBI__GCF_000183725.1:WP_013459322.1
          Length = 293

 Score =  365 bits (938), Expect = e-106
 Identities = 174/292 (59%), Positives = 229/292 (78%)

Query: 1   MLISVPATSANLGPGFDTLGLAVDLRNEIVIKPSKFLSLSTHGEGADNPKIKKNSLFLSI 60
           M +SVPATSANLGPGFD+LGLAVDLRN++ + PS+F ++S  GEG +NP++K N+LF+SI
Sbjct: 1   MFVSVPATSANLGPGFDSLGLAVDLRNQVELVPSRFFAVSIKGEGENNPRLKGNNLFVSI 60

Query: 61  FNENYKRLSGKANNFRFEFTNRIPISRGLGSSSAVIVAALSGAYAMAGVKYNKREILNQA 120
           FNE+Y+RL+ K  NF+F F N+IP+SRGLGSSSAVIV+A+S A+  AGVK +KR ILN A
Sbjct: 61  FNEHYRRLTQKRQNFKFTFYNQIPMSRGLGSSSAVIVSAISCAHEAAGVKVSKRRILNHA 120

Query: 121 LRYEHHPDNITPAVMGGFNVACVEGDRVYSKKRRMPDYLRAVVVVPNRTISTARSRTVLP 180
           L YE HPDNITPAVMGGFN A VE  +V+S+++ +PDYL+AVVV+PN+ ISTA+SRT LP
Sbjct: 121 LVYESHPDNITPAVMGGFNAAMVEKQKVFSQQKHLPDYLKAVVVIPNKPISTAKSRTTLP 180

Query: 181 KMYRKEETVYSLSRAAYMTALFMSESWDLLRIASKDKLHQARRMKMMPELFDVQKLALKQ 240
           K Y KE  V++LS  A     F +E W++LR+A++D+ HQ  RMKM+PELF VQK+A   
Sbjct: 181 KSYSKENAVFNLSHTAVTVGAFFNEDWEMLRLATQDRFHQKVRMKMLPELFAVQKMAYDN 240

Query: 241 GALMSTLSGSGSTFFNLAYEKDTDRIAQSLRARFPQFRVFVLALDNNGVITK 292
           GALMSTLSGSGSTFFN+ Y++D   +A   +A F  F + +L  DN+G++ +
Sbjct: 241 GALMSTLSGSGSTFFNMVYDQDAKMLADKFKAEFSDFEIKILGFDNDGLVVE 292


Lambda     K      H
   0.320    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 306
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 293
Length adjustment: 26
Effective length of query: 266
Effective length of database: 267
Effective search space:    71022
Effective search space used:    71022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_013459322.1 SULKU_RS02335 (homoserine kinase)
to HMM TIGR00191 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.23598.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23598.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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