Alignments for a candidate for argG in Sulfuricurvum kujiense DSM 16994

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_013459594.1 SULKU_RS03710 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000183725.1:WP_013459594.1
          Length = 405

 Score =  493 bits (1269), Expect = e-144
 Identities = 242/388 (62%), Positives = 295/388 (76%), Gaps = 3/388 (0%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGAS--KAIAL 59
           K+VLAYSGGLDTS+ILKWL++ Y  EV+ FTADIGQGEEVE AR KA+  G         
Sbjct: 7   KVVLAYSGGLDTSVILKWLQDEYNCEVVTFTADIGQGEEVEPARAKAISLGIKPENIYIE 66

Query: 60  DLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKG 119
           DL+EEFVRD+VFPM RA A+YEG YLLGTSIARPLIAK    IA   GA+A++HGATGKG
Sbjct: 67  DLREEFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKRQAEIARITGADAVSHGATGKG 126

Query: 120 NDQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEK-PYSMDANL 178
           NDQVRFE+        + +IAPWREW    R++++AYA  HGI + ++ +K PYSMDANL
Sbjct: 127 NDQVRFEMGYLGQNSALTIIAPWREWDLNSREKLLAYAAEHGIKIEMSGKKSPYSMDANL 186

Query: 179 LHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAAL 238
           LHISYEGG+LEDP AEP + M+R T  P+ APD PEY+E+ + +GDPV++NG+ LSPA +
Sbjct: 187 LHISYEGGILEDPAAEPEESMWRWTVSPQNAPDEPEYIEIGYEKGDPVSLNGKALSPAVM 246

Query: 239 LQRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQR 298
           L++LN I GRHG+GR DIVENRFVGMKSRG YETPGGTI+  A RA+ESLTLDRE  H +
Sbjct: 247 LEQLNIIAGRHGIGRADIVENRFVGMKSRGCYETPGGTIMIKAHRAIESLTLDREEAHLK 306

Query: 299 DMLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLY 358
           D L P+YA+L+Y GFW+APERE LQA  D   ++V G  RLKLYKGNV VVGR +  SL+
Sbjct: 307 DELMPRYAKLIYNGFWFAPEREMLQAAIDKTQQNVRGTVRLKLYKGNVMVVGRSSDLSLF 366

Query: 359 RQDLVSFDEAGGYDQKDAEGFIKIQALR 386
             +  +F+E   YDQKDA GFIK+ ALR
Sbjct: 367 NPEYCTFEEDSVYDQKDAGGFIKLNALR 394


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 530
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 405
Length adjustment: 31
Effective length of query: 369
Effective length of database: 374
Effective search space:   138006
Effective search space used:   138006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_013459594.1 SULKU_RS03710 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.20979.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20979.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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