Alignments for a candidate for argB in Sulfuricurvum kujiense DSM 16994

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_013460435.1 SULKU_RS07945 acetylglutamate kinase

Query= BRENDA::Q9X2A4
         (282 letters)



>NCBI__GCF_000183725.1:WP_013460435.1
          Length = 283

 Score =  259 bits (661), Expect = 6e-74
 Identities = 138/279 (49%), Positives = 187/279 (67%), Gaps = 4/279 (1%)

Query: 2   RIDTVNVLLEALPYIKEFYGKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHG 61
           +IDTV  L++A+P+IKEF  +  VIK+GGSA   +  K  F QDI+LL   G+K +IVHG
Sbjct: 4   KIDTVKTLMDAMPFIKEFRDEIVVIKYGGSAQSSDELKAKFAQDIVLLHLVGVKVVIVHG 63

Query: 62  GGPAISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGIC 121
           GG  ISQ++ DL I   F +G RV+  + M IVEMVL G+INKEI   LN HG +A+GI 
Sbjct: 64  GGSRISQLLGDLKIPTEFIDGERVSTPEVMRIVEMVLSGEINKEITSLLNSHGAKAIGIS 123

Query: 122 GKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGED-GH-SYNI 179
           GKD+  ++A K       G  G+V+ V  +++H L+   +IPVIAP+G  E  GH  YNI
Sbjct: 124 GKDAHFLMA-KPKDEAKFGLTGRVESVKSDVIHNLLREGFIPVIAPIGADEALGHPGYNI 182

Query: 180 NADTAAAEIAKSLMAEKLILLTDVDGVLKDGK-LISTLTPDEAEELIRDGTVTGGMIPKV 238
           NAD AA+ +A ++ A K+I +TD  GVL + K L+STLT  + E L  +GT+ GGM+PKV
Sbjct: 183 NADLAASAVAAAIGACKVIFMTDTPGVLNNQKELLSTLTEAQVESLKANGTIHGGMVPKV 242

Query: 239 ECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMI 277
           +  + AV GGV   HII+G +EHAILLE+F+  G+GT I
Sbjct: 243 DACLEAVDGGVKKAHIIDGRIEHAILLELFTSDGVGTQI 281


Lambda     K      H
   0.318    0.140    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 266
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 283
Length adjustment: 26
Effective length of query: 256
Effective length of database: 257
Effective search space:    65792
Effective search space used:    65792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate WP_013460435.1 SULKU_RS07945 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.20420.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20420.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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