Alignments for a candidate for asp-kinase in Mesorhizobium ciceri WSM1271

Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_013529459.1 MESCI_RS08035 aspartate kinase

Query= SwissProt::Q88EI9
         (411 letters)



>NCBI__GCF_000185905.1:WP_013529459.1
          Length = 417

 Score =  399 bits (1026), Expect = e-116
 Identities = 219/416 (52%), Positives = 288/416 (69%), Gaps = 13/416 (3%)

Query: 1   MALIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQITDQ 60
           MA IV KFGGTSV  I RI  VA  VK+  +AG ++ VV+SAM+G+TN L+   ++ +  
Sbjct: 1   MARIVMKFGGTSVADIARIRNVARHVKREVDAGHEVAVVVSAMAGKTNELVGWTREASPM 60

Query: 61  PVPRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQIDDQK 120
              RE D +V++GEQVT  LL + L   GV A S+ G Q+ I TD++H  ARIL ID   
Sbjct: 61  HDAREYDAVVASGEQVTAGLLAITLQNMGVHARSWQGWQIPIKTDNAHGAARILDIDGAF 120

Query: 121 IRADLKEGRVVVVAGFQGVDEHGSITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180
           +     EG+V V+AGFQG+     I TLGRGGSDT+ VA+AAA+KAD C IYTDVDGVYT
Sbjct: 121 LIKRFGEGQVAVIAGFQGIGPDNRIATLGRGGSDTSAVAIAAAVKADRCDIYTDVDGVYT 180

Query: 181 TDPRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSFKE------ 234
           TDPR+ P+ARRL KI+FEEMLEMASLG+KVLQ+RSVE A  + V   V  SF +      
Sbjct: 181 TDPRIEPKARRLAKISFEEMLEMASLGAKVLQVRSVELAMVHRVRTFVRSSFDDPDAPGM 240

Query: 235 -----GPGTLITIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISASNI 289
                 PGTLI  DEEE +EQ +++GIA+ +DEA++++R V D PGVA  I GP++ +NI
Sbjct: 241 GDLLNPPGTLI-CDEEEIVEQQVVTGIAYAKDEAQISLRRVGDRPGVAAGIFGPLAEANI 299

Query: 290 EVDMIVQNVAHDNT-TDFTFTVHRNEYEKAQSVLENTAREIGAREVIGDTKIAKVSIVGV 348
            VDMIVQN++ D   TD TFTV   + +KA +VLE     IG   V  +  ++KVS++G+
Sbjct: 300 NVDMIVQNISEDGKFTDMTFTVPSGDVDKALAVLERLKASIGYDVVQSEAGMSKVSVIGI 359

Query: 349 GMRSHAGVASCMFEALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLD 404
           GMRSHAGVA+  F+ALA +SINI+ I+TSEIK+S++++  Y ELAVR LH+ + LD
Sbjct: 360 GMRSHAGVAATAFKALADKSINIRAITTSEIKISILIDGPYTELAVRTLHSVYGLD 415


Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 436
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 417
Length adjustment: 31
Effective length of query: 380
Effective length of database: 386
Effective search space:   146680
Effective search space used:   146680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_013529459.1 MESCI_RS08035 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.24224.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24224.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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