Alignments for a candidate for ilvE in Mesorhizobium ciceri WSM1271

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_013530016.1 MESCI_RS10940 branched-chain amino acid aminotransferase

Query= reanno::BFirm:BPHYT_RS16285
         (307 letters)



>NCBI__GCF_000185905.1:WP_013530016.1
          Length = 297

 Score =  228 bits (581), Expect = 1e-64
 Identities = 116/262 (44%), Positives = 165/262 (62%), Gaps = 5/262 (1%)

Query: 7   DGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHTKRLLNS 66
           DG IWM+G+ + W DAKIHVLTH LHY   VFEG RAY     G  IF+L EHT+RL  S
Sbjct: 10  DGFIWMNGEFVQWGDAKIHVLTHGLHYASAVFEGERAY-----GGEIFKLNEHTERLHES 64

Query: 67  AKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIHVAIAAW 126
           A++    +P+    L  A   ++++   +  Y+RPI W GSE++GVSA+ N I+ AIA W
Sbjct: 65  ARLLGFKIPYSVAELNDASSTLLKKQGFQDAYVRPIAWRGSEQMGVSAQNNRINCAIAIW 124

Query: 127 PWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADGYDEALL 186
            W +Y       KGIR+  + + R     +  ++KA+G Y+   ++   A A GY +A++
Sbjct: 125 QWPSYFDPAQKLKGIRLDVAEWRRPDPRTAPSKSKAAGLYMICTMSKHAAEAKGYADAMM 184

Query: 187 LDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEKRITRDE 246
           LD  G V+E +G N F V +GK++TP     LDGITR TVI LA+D G++VIE+ I  +E
Sbjct: 185 LDWRGQVAEATGANIFFVKDGKIHTPKPDCFLDGITRRTVIGLAKDRGLEVIERAILPEE 244

Query: 247 VYTCDEAFFTGTAAEVTPIREL 268
           + + ++ F TGTAAEVTP+ E+
Sbjct: 245 LESFEQCFLTGTAAEVTPVSEI 266


Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 266
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 297
Length adjustment: 27
Effective length of query: 280
Effective length of database: 270
Effective search space:    75600
Effective search space used:    75600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_013530016.1 MESCI_RS10940 (branched-chain amino acid aminotransferase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.13174.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13174.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.