Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_013530109.1 MESCI_RS11435 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000185905.1:WP_013530109.1
Length = 1168
Score = 1263 bits (3268), Expect = 0.0
Identities = 694/1156 (60%), Positives = 819/1156 (70%), Gaps = 104/1156 (8%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MP+RTDIKSILI+GAGPIVIGQACEFDYSG QACKAL+EEG+RVILVNSNPATIMTDPE+
Sbjct: 1 MPRRTDIKSILIIGAGPIVIGQACEFDYSGTQACKALKEEGFRVILVNSNPATIMTDPEL 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADATYIEPI EVV KII KERPDA+LPTMGGQTALN AL L R GVLE + V MIGA A
Sbjct: 61 ADATYIEPITPEVVAKIIAKERPDALLPTMGGQTALNTALSLRRMGVLERYNVEMIGADA 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIA------------HTMEEA------------- 155
AIDKAEDR F AMKKIGLET +S +A H E A
Sbjct: 121 TAIDKAEDRALFREAMKKIGLETPKSMLANATDVKNTDRKTHEAERAALKAEKPADLDAA 180
Query: 156 -----------------------LAVAAD----VGFPCIIRPSFTMGGSGGGIAYNREEF 188
+A+AA VG P IIRPSFTMGG+GGGIAYNR EF
Sbjct: 181 LDALETRWNLGEGDRKQRYISHGMAIAAQALDHVGLPAIIRPSFTMGGTGGGIAYNRAEF 240
Query: 189 EEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSI 248
EI GLD SPT E+LI+ES++GWKEYEMEVVRD+ DNCIIVCSIEN D MG+HTGDSI
Sbjct: 241 YEIVQSGLDASPTTEVLIEESVLGWKEYEMEVVRDRADNCIIVCSIENIDPMGVHTGDSI 300
Query: 249 TVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSS 308
TVAPA TLTDKEYQ+MRNAS+AVLREIGVETGGSNVQFAVNP +GRL+VIEMNPRVSRSS
Sbjct: 301 TVAPALTLTDKEYQMMRNASIAVLREIGVETGGSNVQFAVNPADGRLVVIEMNPRVSRSS 360
Query: 309 ALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFA 368
ALASKATGFPIAK+AAKLAVGYTLDEL NDITGG TPASFEPSIDYVVTKIPRF FEKF
Sbjct: 361 ALASKATGFPIAKIAAKLAVGYTLDELENDITGGATPASFEPSIDYVVTKIPRFAFEKFP 420
Query: 369 GANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFD----PKVS---------L 415
GA LTT MKSVGEVMAIGRT QESLQKALRGLE G TG D P +S
Sbjct: 421 GAEPVLTTAMKSVGEVMAIGRTFQESLQKALRGLETGLTGLDEIEIPGLSHGGLGSANHA 480
Query: 416 DDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEK 475
DD A IR L DR+ +A A R G S++ V + ID WFL QI +V +E +
Sbjct: 481 DDRNA---IRAALGTPTPDRLRMVAQAIRMGTSLEDVHAMCKIDPWFLEQIAGIVAMEAR 537
Query: 476 VAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAE 535
+ E GI +A LR LK GF+DARLA L I+K R++ D+HPVYKR+DTCAAE
Sbjct: 538 IREHGIPE-DAVNLRMLKAMGFSDARLASLTKTDAEVIQKAREKLDVHPVYKRIDTCAAE 596
Query: 536 FATDTAYMYSTYE---EECEANPS--TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALR 590
FA+ TAYMYS+YE AN + + R+K+++LGGGPNRIGQGIEFDYCC HA+ ALR
Sbjct: 597 FASPTAYMYSSYEVPFAGALANEAQVSSRKKVVILGGGPNRIGQGIEFDYCCCHAAFALR 656
Query: 591 EDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPK----GVIVQYGGQT 646
+ GYE IM+NCNPETVSTDYDTSDRLYFEP+T EDVLEI+R E+ GVIVQ+GGQT
Sbjct: 657 DAGYEAIMINCNPETVSTDYDTSDRLYFEPLTAEDVLEILRAEQASGELVGVIVQFGGQT 716
Query: 647 PLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAK 706
PLKLA ALE AG+P++GTSPD ID AEDR+RFQ + +L L QP N ++E A A
Sbjct: 717 PLKLADALEKAGIPILGTSPDMIDLAEDRDRFQKLLHKLGLSQPKNGIAYSVEQARLVAG 776
Query: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAV----------SVSNDA-------- 748
E+G+PLVVRPSYVLGGRAM+I++DE L+ Y V ND
Sbjct: 777 ELGFPLVVRPSYVLGGRAMQIIHDEGMLQTYLLDTVPGLVPEDIKQKYPNDKTGQINTLL 836
Query: 749 ---PVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEI 805
P+L D +L A+EVDVD +CDG+ + GI+EHIE+AG+HSGDSACSLP ++L E+
Sbjct: 837 GKNPLLFDTYLSGAIEVDVDCLCDGKATFVSGILEHIEEAGIHSGDSACSLPVHSLPSEL 896
Query: 806 QDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVA 865
D + +Q LA L V GLMNVQ+A+K+ VY++EVNPRA+RTVPFV+K G P+AK+A
Sbjct: 897 VDELERQTAALARALNVGGLMNVQYAIKDGTVYVLEVNPRASRTVPFVAKTIGRPIAKIA 956
Query: 866 ARVMAGKSL----AEQGVTKEV-IPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGV 920
AR+MAG+ L A G + P + +VKE V PF +FPGVD LLGPEMRSTGEVMG+
Sbjct: 957 ARIMAGEKLEDAFAHYGAMPDPRNPGHIAVKEAVFPFARFPGVDILLGPEMRSTGEVMGL 1016
Query: 921 GRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIV 980
R FA AFAK+QLG+ + + G +SVR+ DK+ ++ +L GF++ AT GTA
Sbjct: 1017 DRDFALAFAKSQLGAGVDLPRSGTLFVSVRDEDKKGILPAVKRLAGLGFKVLATSGTARF 1076
Query: 981 LGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHY 1040
L E G+ +NKV EGRPHI+D I+N + + NTT G++A+ DS+ +RR+ L KV Y
Sbjct: 1077 LAENGVVAEKINKVLEGRPHIEDAIRNRQVQIVFNTTDGQKAVSDSKSLRRATLMQKVPY 1136
Query: 1041 DTTLNGGFATAMALNA 1056
TTL+G A A A+ A
Sbjct: 1137 YTTLSGAAAVAEAIAA 1152
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3279
Number of extensions: 148
Number of successful extensions: 20
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 4
Length of query: 1073
Length of database: 1168
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1122
Effective search space: 1152294
Effective search space used: 1152294
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_013530109.1 MESCI_RS11435 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.1215.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1215.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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