Alignments for a candidate for carA in Mesorhizobium ciceri WSM1271

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_013530125.1 MESCI_RS11515 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_000185905.1:WP_013530125.1
          Length = 405

 Score =  384 bits (985), Expect = e-111
 Identities = 207/384 (53%), Positives = 255/384 (66%), Gaps = 14/384 (3%)

Query: 4   SALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNV 63
           +ALLVL DGT   GR +GATGSAV EV FNT++TGYQEILTDPSY+ QIVT T+PHIGN+
Sbjct: 18  TALLVLADGTVIEGRGLGATGSAVAEVCFNTALTGYQEILTDPSYAGQIVTFTFPHIGNI 77

Query: 64  GTNDADEES----SQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLT 119
           GTND D E     ++  A G V +      SN+R    L  +LK+  IVA++ IDTR LT
Sbjct: 78  GTNDEDIEDLNPVARAGAVGAVFKADVTNPSNYRAGTGLDQWLKKRGIVALSGIDTRALT 137

Query: 120 RLLREKGAQNGCIIAGDNPDAALALE----KARAFPGLNGMDLAKEVTTAEAYSWTQGSW 175
            L+REKG  N  I     PD    ++    +A A+ GL G+DLAKEVT+ ++  W +  W
Sbjct: 138 ALIREKGMPNAVIAHA--PDGVFDIDDLKRRAAAWSGLIGLDLAKEVTSGQSSVWRETPW 195

Query: 176 TLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDG 235
               G  E   + E   HVVA D+G KRNILR+L   G ++T+VPA++ AE++L M PDG
Sbjct: 196 VWNEGFGE---QIEPTMHVVAIDYGVKRNILRLLAGLGAKVTVVPAKSGAEEILAMQPDG 252

Query: 236 IFLSNGPGDP-APCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGN 294
           IFLSNGPGDP A  DYA+  I+  L+TDIPVFGICLGHQ+LALA G KT KM  GHHG N
Sbjct: 253 IFLSNGPGDPEATGDYAVPVIRDLLKTDIPVFGICLGHQMLALALGGKTAKMHQGHHGAN 312

Query: 295 HPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHP 354
           HPVKD     V I + NHGFAVD  +LP+ +  TH SLFDG+  GI  T +P FS Q HP
Sbjct: 313 HPVKDHTTGKVEIVSMNHGFAVDADSLPSGVEETHVSLFDGSNCGITLTGRPVFSVQHHP 372

Query: 355 EASPGPHDAAPLFDHFIELIEQYR 378
           EASPGP D+  LF  F+ LI + R
Sbjct: 373 EASPGPQDSHYLFRRFVNLIREKR 396


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 492
Number of extensions: 20
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 405
Length adjustment: 31
Effective length of query: 351
Effective length of database: 374
Effective search space:   131274
Effective search space used:   131274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_013530125.1 MESCI_RS11515 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.11760.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11760.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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