Alignments for a candidate for cysK in Nitratifractor salsuginis DSM 16511

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate WP_013553123.1 NITSA_RS00810 cysteine synthase A

Query= BRENDA::P9WP55
         (310 letters)



>NCBI__GCF_000186245.1:WP_013553123.1
          Length = 303

 Score =  339 bits (870), Expect = 4e-98
 Identities = 174/303 (57%), Positives = 221/303 (72%), Gaps = 2/303 (0%)

Query: 3   IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIK 62
           I +DI Q IG+TPL+RL  +++ A   I+AK E+FNP +S+KDR+  +M+  A + G + 
Sbjct: 2   IFDDIQQTIGQTPLIRLAYLSNNAT--ILAKAEYFNPGSSIKDRVAKSMIDGAMERGELD 59

Query: 63  PDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGM 122
            +T+++EPTSGNTGI LA+VCA RG R +LTMPE+MSLERR LLR  GAEL+LTP A+GM
Sbjct: 60  AETVVIEPTSGNTGIGLALVCAVRGLRLILTMPESMSLERRKLLRHLGAELVLTPAAEGM 119

Query: 123 SGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGT 182
            GAI +A  LA + ++ F+P QF NP NPA H   TA+E+   T G V+I VA VGTGGT
Sbjct: 120 QGAIEEARRLAASFEKSFIPDQFANPDNPAAHERGTAQEILEATGGAVNIFVAAVGTGGT 179

Query: 183 ITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIIT 242
           ++G  + +K   P  R VAVEPAASP +S G+ GPH IQGIGAGFVP  LD DLVDE++T
Sbjct: 180 LSGNGRALKAANPKLRLVAVEPAASPAISRGEAGPHKIQGIGAGFVPDNLDLDLVDEVLT 239

Query: 243 VGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLST 302
           V +E+A+  AR  AR+ GLLVGISSGA   AA ++A+R EN GK IV VLPD  ERYLST
Sbjct: 240 VTDEEAIAFAREAARKAGLLVGISSGANLAAAYRLAQREENRGKTIVTVLPDTAERYLST 299

Query: 303 PLF 305
            LF
Sbjct: 300 ELF 302


Lambda     K      H
   0.318    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 327
Number of extensions: 18
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 303
Length adjustment: 27
Effective length of query: 283
Effective length of database: 276
Effective search space:    78108
Effective search space used:    78108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_013553123.1 NITSA_RS00810 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.2891.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2891.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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