Alignments for a candidate for leuC in Nitratifractor salsuginis DSM 16511

Align isopropylmalate/citramalate isomerase large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (characterized)
to candidate WP_013553204.1 NITSA_RS01215 3-isopropylmalate dehydratase large subunit

Query= reanno::DvH:208495
         (419 letters)



>NCBI__GCF_000186245.1:WP_013553204.1
          Length = 425

 Score =  413 bits (1062), Expect = e-120
 Identities = 210/424 (49%), Positives = 289/424 (68%), Gaps = 9/424 (2%)

Query: 1   MAHTLAQKILQRHTDEAITDAGQIVRCRVSMVLANDITAPLAIKSFRAMGAKRVFDKDRV 60
           M  T+++KI   H    +  AG+IVR  + MV+ NDIT P++I++F   GAK + + D  
Sbjct: 1   MGQTISEKIFSEHAGRPVK-AGEIVRVDIDMVIGNDITTPISIRAFEESGAKELANPDGF 59

Query: 61  ALVMDHFTPQKDIEAAQQVKLTREFAREMGVTHYYEGGDCGVEHALLPELGLVGPGDVVV 120
           A+VMDH+ P KDI +A Q K++R+FA +  + ++++  D G+EHALLPE GLV PGDV++
Sbjct: 60  AIVMDHYIPAKDIASANQAKISRDFALKHNLKYFFDEKDMGIEHALLPEKGLVVPGDVII 119

Query: 121 GADSHTCTYGGLGAFATGLGSTDVAGAMALGETWFKVPPTIRATFTGTLPAYVGAKDLIL 180
           GADSHTCT+G LGAF+TG+GSTD++ A+  G  WFKVP TI+    G    ++  KD+IL
Sbjct: 120 GADSHTCTHGALGAFSTGMGSTDISFAIITGGNWFKVPETIKVELVGKPGPHIYGKDIIL 179

Query: 181 TLIGAIGVDGALYRALEFDGAAIEALDVEGRMTMANMAIEAGGKAGLFAADAKTLTYCTT 240
            +I  +GVDGALY+ALEF G  ++ L ++ R ++ NMAIEAG K G+ A D  TL Y   
Sbjct: 180 EVIRILGVDGALYKALEFTGDTLKYLSMDDRFSICNMAIEAGAKNGIIAVDDITLEYLEE 239

Query: 241 AG------RTGDTAFSADAGAVYERELSFDVTGMTPVVACPHLPDNVKPVSE-VKD-VTV 292
                   R      ++D  A Y + ++ DV  ++PV+A P LP N KPV + V D + +
Sbjct: 240 RKKVNGGLRAEPKIHTSDPDAEYCQSITIDVEKLSPVIAYPFLPSNGKPVEQAVADRIKI 299

Query: 293 QQVVIGSCTNGRIGDLREAAAVLRGRKVSRDVRCIVLPATPGIWRQALREGLIETFMEAG 352
            QV+IGSCTNGR+ DLR AA ++RG++V+R  R IV PAT  I+ QA +EGLI+T +EAG
Sbjct: 300 DQVMIGSCTNGRLEDLRIAAEIVRGKRVARHTRMIVTPATQRIFMQAEKEGLIDTLIEAG 359

Query: 353 CIVGPATCGPCLGGHMGILADGERAIATTNRNFKGRMGSLESEVYLSGPATAAASAVTGV 412
            +V   TCG CLGG+MGIL DGE+ ++TTNRNF GRMG+  SE+YL+  A AAASA+ G 
Sbjct: 360 AVVSNPTCGACLGGYMGILGDGEKCVSTTNRNFVGRMGARTSEIYLANSAVAAASAIEGY 419

Query: 413 ITDP 416
           ITDP
Sbjct: 420 ITDP 423


Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 528
Number of extensions: 22
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 425
Length adjustment: 32
Effective length of query: 387
Effective length of database: 393
Effective search space:   152091
Effective search space used:   152091
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_013553204.1 NITSA_RS01215 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR02083 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.15675.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15675.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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