Alignments for a candidate for asp-kinase in Nitratifractor salsuginis DSM 16511

Align Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_013553601.1 NITSA_RS03245 aspartate kinase

Query= SwissProt::A4VJB4
         (412 letters)



>NCBI__GCF_000186245.1:WP_013553601.1
          Length = 401

 Score =  428 bits (1100), Expect = e-124
 Identities = 216/402 (53%), Positives = 303/402 (75%), Gaps = 3/402 (0%)

Query: 3   LIVQKFGGTSVGTVERIEQVAEKVKKFRDGGDDIVVVVSAMSGETNRLIDLAKQISEQPV 62
           LIVQK+GGTSVG++ERIE VA++V K R+ G+D+VVVVSAMSGETN+LID A   S+ P 
Sbjct: 2   LIVQKYGGTSVGSLERIENVAKRVAKAREEGNDLVVVVSAMSGETNKLIDYAHHFSKTPS 61

Query: 63  PRELDVMVSTGEQVTIALLAMALIKRGVPAVSYTGNQVRILTDSAHTKARILQIDAQRIQ 122
            RE+D+++S+GE+VT +LLA+AL + G  A++ TG Q  I TD  HT ARI  ID   I+
Sbjct: 62  KREMDILLSSGERVTASLLAIALQEMGYDAIAMTGRQAGIKTDGTHTYARIESIDTSAIE 121

Query: 123 RDIKAGRVVVVAGFQGVDEKGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYTTD 182
             IK G++V+VAGFQG++EKG +TTLGRGGSD + VALA AL AD C+IY+DVDG+YTTD
Sbjct: 122 ERIKEGKIVIVAGFQGINEKGEVTTLGRGGSDLSAVALAGALHADACEIYSDVDGIYTTD 181

Query: 183 PRVVAKAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYSVPLRVLHSFQEGPGTLITL 242
           PR+  KA++LD I+++EMLE++SLG+KVLQ R+VE A K  V +    SF +GPGT+I  
Sbjct: 182 PRIEPKAKKLDYISYDEMLELSSLGAKVLQNRSVELAKKMGVKIIAKSSFSDGPGTIIA- 240

Query: 243 DEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEVDMIVQNVAHDN 302
           +E E+ME  ++SGIA ++++A++++R V D PG+A +I   ++   + VDMI+QN + + 
Sbjct: 241 EENEAMEAVLVSGIALDKNQARVSLRDVEDRPGIAAEIFNRLADEQINVDMIIQNASKEG 300

Query: 303 TTDFTFTVHRNDYNNALQVLQGIAAEMGAREAIGDTNIAKVSIVGVGMRSHAGVASRMFE 362
            T+  FTV +++   A +V+     + G  EA  D N+ KVSIVGVGM+SH+G+A++ F 
Sbjct: 301 KTNLGFTVPQSELEAAKKVIGSFEKDFG--EADYDENVCKVSIVGVGMKSHSGIAAKAFS 358

Query: 363 ALAKENINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELD 404
           A+A+ NINI+MISTSEIK+S++++EKY ELAVR LH  +ELD
Sbjct: 359 AMAENNINIEMISTSEIKISMIVDEKYGELAVRVLHETYELD 400


Lambda     K      H
   0.317    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 457
Number of extensions: 15
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 401
Length adjustment: 31
Effective length of query: 381
Effective length of database: 370
Effective search space:   140970
Effective search space used:   140970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_013553601.1 NITSA_RS03245 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.16752.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16752.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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