Alignments for a candidate for dapB in Nitratifractor salsuginis DSM 16511

Align 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) (characterized)
to candidate WP_013553628.1 NITSA_RS03385 4-hydroxy-tetrahydrodipicolinate reductase

Query= reanno::Miya:8499684
         (259 letters)



>NCBI__GCF_000186245.1:WP_013553628.1
          Length = 255

 Score =  181 bits (459), Expect = 1e-50
 Identities = 108/253 (42%), Positives = 149/253 (58%), Gaps = 5/253 (1%)

Query: 7   VTGAGGRMGSTICRMAQEDPVLTLAAVVERPERLASLDVWKCPSGSDPDAVFATVPGGVV 66
           + GA GRMG+ + +   ED  L L+AV    E    L      + S P+ +       VV
Sbjct: 6   ILGATGRMGAHLIKNVMEDDTLELSAVHVYDELKQELPEGVLATNSIPEMLKVC---DVV 62

Query: 67  VDFTSPEASMANARAAARAGVSHVIGTTGLTAEQKAELADLARTARIFWAPNMSIGVNVL 126
           +DF++P A+     AA     + VI TTGL+  Q+  + + ++   + +A NMS G+  L
Sbjct: 63  IDFSAPAATQELCEAAMENPTALVIATTGLSVHQQNLIEEASKKMPVLYASNMSAGI-AL 121

Query: 127 LKILPQLVQQLGEQYDLEMVELHHNRKKDSPSGTALRLAECLAEARGWNLPDVANYHREG 186
           LK L Q V    + +D+E+VE+HH  K D+PSGTAL LAE  A+ RG +L  V    R+G
Sbjct: 122 LKQLVQQVSSTLKDFDIEIVEMHHRHKVDAPSGTALTLAEFAAKGRGLDLEKVRVSGRDG 181

Query: 187 IIGERPKDEIGIQTIRGGDVVGVHTIYAMGPGERIEITHQAHSRENFAQGALRAAKWLPQ 246
            IG R KDEI +  +RGGD+VG HT+     GE IE+TH A SRE F++GA+RAAKWL  
Sbjct: 182 QIGPRSKDEIAVMALRGGDIVGRHTVGFYNDGEYIELTHVATSRETFSKGAIRAAKWLVD 241

Query: 247 QQPGTLYSMLDML 259
           Q+PG LYS+ D L
Sbjct: 242 QEPG-LYSINDCL 253


Lambda     K      H
   0.318    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 171
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 255
Length adjustment: 24
Effective length of query: 235
Effective length of database: 231
Effective search space:    54285
Effective search space used:    54285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_013553628.1 NITSA_RS03385 (4-hydroxy-tetrahydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.8270.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8270.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.