Alignments for a candidate for glnA in Nitratifractor salsuginis DSM 16511

Align glutamine synthetase, type I (characterized)
to candidate WP_013553649.1 NITSA_RS03495 type I glutamate--ammonia ligase

Query= metacyc::SYNPCC7942_2156-MONOMER
         (473 letters)



>NCBI__GCF_000186245.1:WP_013553649.1
          Length = 476

 Score =  466 bits (1199), Expect = e-136
 Identities = 231/472 (48%), Positives = 317/472 (67%), Gaps = 8/472 (1%)

Query: 6   QEVLQLIQEKGIQLVDLKFIDMPGIWQHLTLHVSQIDENSFVEGVPFDGSSIRGWKAINE 65
           +E     ++  ++ VD +F D+ G W H+T  +  IDE     G+PFDGSS+  W+ I +
Sbjct: 9   EEFFAFCKDNEVEFVDFRFTDIKGAWHHITYRLGAIDEGMLENGIPFDGSSVDAWQPIEK 68

Query: 66  SDMTMVPDPTTAWIDPFMKEPTLSMICTIYEPRTNTPYERCPRAIAQKAVDYLKASGIGD 125
           SDM + PD  TA++DPF  +PT+ +IC +++     PYE+CPR+IA+KA+ Y+K  GI D
Sbjct: 69  SDMILKPDVPTAFLDPFTADPTIVVICDVFDIYKGQPYEKCPRSIAKKALQYMKEQGIAD 128

Query: 126 TAYFGPEAEFFIFDDVRFDQAENKSYYYVDSIEGRWNSGRE-EEGGNLGYKPRYKEGYFP 184
            AYFGPE EFFIFD+VR     N+S Y VDS EG W+  +  E+  N+G++P  K GYFP
Sbjct: 129 EAYFGPENEFFIFDNVRIWTGINRSGYEVDSDEGEWSYDKNYEDMPNIGHRPGTKGGYFP 188

Query: 185 VAPTDTSQDMRSEMLLTMADCGVPIEKHHHEVATGGQCELGFRFGKLIEAADWLMTYKYV 244
             PTD+  D+R+EM+  M + G+ +   HHEVA   Q E+G +FG LIEAAD +  YKYV
Sbjct: 189 TMPTDSMVDLRAEMMQVMEEIGLEVVLGHHEVAQ-AQGEIGIKFGNLIEAADNVQKYKYV 247

Query: 245 IKNVGRRYGKTITFMPKPLFNDNGSGMHTHQSIWNDGQPLFAGD-QYAGLSQMALWYIGG 303
           +K V    GKT TFMPKPL+ DNG+GMH HQS+W DG+ LF  + +Y  LS+ AL Y+GG
Sbjct: 248 VKMVAHLNGKTATFMPKPLYGDNGNGMHVHQSLWKDGKNLFYKEGEYGNLSETALHYLGG 307

Query: 304 ILKHAPALLALTNPTTNSYKRLVPGFEAPVNLAYSQGNRSASVRIPLSGTNPKAKRLEFR 363
           + KHA A+ +LTN TTNSYKRL+PGFEAP  L YS  NRSA+ RIP  G    A R+E R
Sbjct: 308 VFKHAHAVASLTNATTNSYKRLIPGFEAPSILTYSSQNRSAACRIPY-GAGEMATRIETR 366

Query: 364 CPDATSNPYLAFAAMLCAGIDGIKNQIDPGEPLDVDIYDLSPEELAK--IPSTPGSLKDA 421
            PD+++ PYLAF+A+L AGIDGIKN+ +P  P+D+D+++L+ +E+ +  IP  P +L++ 
Sbjct: 367 FPDSSACPYLAFSALLMAGIDGIKNKYEPVGPMDIDLFELTLDEIREKNIPQMPHTLREG 426

Query: 422 LKALEADHDFLTVGGVFTEDFIQNWIEYKLDNEVIPISLRPHPYEFALYYDC 473
           L+AL  DHDFL    VFTE F+  +  YK + +V P   RP  +EF+  Y C
Sbjct: 427 LEALIKDHDFLQ--PVFTELFVDTYQHYKFETQVWPDEARPTAFEFSSTYSC 476


Lambda     K      H
   0.319    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 736
Number of extensions: 37
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 476
Length adjustment: 33
Effective length of query: 440
Effective length of database: 443
Effective search space:   194920
Effective search space used:   194920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_013553649.1 NITSA_RS03495 (type I glutamate--ammonia ligase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.22279.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22279.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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