Alignments for a candidate for dapA in Nitratifractor salsuginis DSM 16511

Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate WP_013553873.1 NITSA_RS04680 4-hydroxy-tetrahydrodipicolinate synthase

Query= BRENDA::O67216
         (294 letters)



>NCBI__GCF_000186245.1:WP_013553873.1
          Length = 298

 Score =  260 bits (664), Expect = 3e-74
 Identities = 132/294 (44%), Positives = 197/294 (67%), Gaps = 5/294 (1%)

Query: 1   MFQGSIVALITPFKEGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIE 60
           M  G++ ALITPF+ GE+D     +LI   + +G DA++  GTTGES TL+ +EH++ IE
Sbjct: 4   MICGAMTALITPFRNGELDEATYADLIRRQIAHGMDAVVPVGTTGESATLSHDEHKRCIE 63

Query: 61  FAVK--RAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHF 118
            AV+  R +G +KVIAG G NATHEA+ +  HA+E GA   L V PYYNKP+Q GLY+H+
Sbjct: 64  IAVEVCRDSG-VKVIAGAGSNATHEAIDIARHAQECGAHAILSVAPYYNKPSQEGLYQHY 122

Query: 119 KTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKESTPNMDRISEIVKRLG 178
           K +A+ ++IP+++YN+P RT V+I   T+F+L  E ENI A KE+T +M+R  +++    
Sbjct: 123 KAIAEAIEIPVMLYNVPGRTSVDIQPATVFRLFDEVENIYAIKEATGSMERAVDLLAARP 182

Query: 179 ESFSVLSGDDSLTLPMMALGAKGVISVANNVMPREVKELIRAALEGDFRRAREIHYYLHD 238
           E   ++SGDD++  P++A GAKGVISV  N++P    +L+  AL GD   ++ I+  L+ 
Sbjct: 183 E-LCLVSGDDAIDYPLLANGAKGVISVTANLLPDLKSKLVHTALAGDLAASKAINDSLYP 241

Query: 239 LFKVLFIETNPIPVKTACWMLGMCEK-EFRLPLTEMSPENENKLREVLKKYNLP 291
           + K +F+E+NPIPVK A ++ G+    E+RLPL   S EN  K+   ++ Y +P
Sbjct: 242 INKAMFVESNPIPVKAAMYLAGLLPTLEYRLPLVPPSAENMKKIEAAIQNYTIP 295


Lambda     K      H
   0.318    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 234
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 298
Length adjustment: 26
Effective length of query: 268
Effective length of database: 272
Effective search space:    72896
Effective search space used:    72896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_013553873.1 NITSA_RS04680 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.10414.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10414.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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