Alignments for a candidate for asd in Nitratifractor salsuginis DSM 16511

Align aspartate semialdehyde dehydrogenase subunit (EC 1.2.1.11) (characterized)
to candidate WP_013553964.1 NITSA_RS05150 aspartate-semialdehyde dehydrogenase

Query= metacyc::MONOMER-6564
         (346 letters)



>NCBI__GCF_000186245.1:WP_013553964.1
          Length = 346

 Score =  302 bits (773), Expect = 1e-86
 Identities = 170/344 (49%), Positives = 224/344 (65%), Gaps = 12/344 (3%)

Query: 1   MGRGLHVAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEAS 60
           M R  ++AVVGATGAVG+++ + LE++NF +  +  LSS RSAG ++ FKG++   +E +
Sbjct: 1   MSRAYNIAVVGATGAVGEEIFRILEEQNFPVGEVLPLSSARSAGAEIEFKGKKYKTEELT 60

Query: 61  PESFEG--VNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADL 118
              F+G  ++IA FSAGGSVS   AP AV+ GA+VIDNTS FRMD   PLVVPE+N  D+
Sbjct: 61  ETVFDGRDIDIAFFSAGGSVSARFAPYAVEAGAVVIDNTSHFRMDPRVPLVVPEINPEDI 120

Query: 119 H--EHNGIIANPNCSTIQMVAALEPIRKAY-GLNKVIVSTYQAVSGAGNEAVKELYSQTQ 175
                 GIIANPNCSTIQMV AL+P+   Y G+ +V V+TYQA SGAG   ++EL  Q Q
Sbjct: 121 SMWRETGIIANPNCSTIQMVLALKPLYDLYGGIERVDVATYQATSGAGKSGMEELVQQMQ 180

Query: 176 AILNKEEIEPEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDL 235
                   E      K +   +QIA N IPQID  Q NGYT EEMKM+NET KI+H  DL
Sbjct: 181 DFFAFRLDES-----KHEAFFHQIALNVIPQIDSPQPNGYTREEMKMVNETNKILH-ADL 234

Query: 236 QVAATCVRLPIQTGHSESVYIEI-DRDDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPAD 294
            V+ATCVR+P+   HSE+V +   +  +  V+ ++  L E P V +QDD    +YPMP  
Sbjct: 235 AVSATCVRVPVLRSHSEAVTVTFPEHVEVDVDKVRLALSEFPDVEVQDDLEHGIYPMPIT 294

Query: 295 AVGKNDVFVGRIRKDLDRANGFHLWVVSDNLLKGAAWNSVQIAE 338
           A   +  +VGRIR+DL   N  H+WVV+D L  GAA N+V+IA+
Sbjct: 295 ATDTDITYVGRIRRDLFAPNILHMWVVADQLRVGAATNAVRIAQ 338


Lambda     K      H
   0.314    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 314
Number of extensions: 17
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 346
Length adjustment: 29
Effective length of query: 317
Effective length of database: 317
Effective search space:   100489
Effective search space used:   100489
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)

Align candidate WP_013553964.1 NITSA_RS05150 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.14722.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14722.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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