Alignments for a candidate for dapE in Nitratifractor salsuginis DSM 16511

Align succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) (characterized)
to candidate WP_013554584.1 NITSA_RS08335 succinyl-diaminopimelate desuccinylase

Query= BRENDA::O25002
         (383 letters)



>NCBI__GCF_000186245.1:WP_013554584.1
          Length = 364

 Score =  345 bits (884), Expect = 2e-99
 Identities = 173/378 (45%), Positives = 248/378 (65%), Gaps = 16/378 (4%)

Query: 1   MDALEITQKLISYPTITPKECGIFEYIKSLFPHFKTLECGENGVKNLFLYRIFNPPKDHA 60
           M+  ++  +L+S P++TP + G+ E+++   P ++ +   E GVKNLF+YR F   +   
Sbjct: 1   MEVTDLLIRLLSAPSVTPDDAGLMEFVQEYLPGYEIIRLDEGGVKNLFMYRKFGEGE--- 57

Query: 61  EEKHAKENTKPLHFCFAGHIDVVPPGNHWQSDPFKPVIKEGFLYGRGAQDMKGGVGAFLS 120
                       H CFAGH+DVVPPG  W+SDPF P I++G +  RGAQDMK GV AF+ 
Sbjct: 58  ------------HLCFAGHVDVVPPGEGWRSDPFTPRIEKGVITARGAQDMKSGVAAFVE 105

Query: 121 ASLNFNPKTPFLLSILLTSDEEGPGIFGTRLMLEKLKEKDLLPHMAIVAEPTCEKVLGDS 180
           A +    +    LS+LLTSDEEG   +GTR+ML  L++  LLP  AIVAEPTCE+  GD+
Sbjct: 106 A-MKRAERFNGTLSLLLTSDEEGDATYGTRIMLAHLRQIGLLPDYAIVAEPTCEERFGDA 164

Query: 181 IKIGRRGSINGKLILKGVQGHVAYPQKCQNPIDTLASVLPLISGVNLDNGDEYFDPSKLV 240
           IKIGRRGSING +  +G QGH AYP+K  NPI  ++ VLP ++GVNLD GDE+F PS+ V
Sbjct: 165 IKIGRRGSINGVIEKRGRQGHAAYPEKAVNPIHKVSQVLPHMAGVNLDEGDEFFAPSQFV 224

Query: 241 ITNLHAGLGANNITPASVEIIFNARHSLKTTKESLKEYLEKVLKDLPYTLELESSSSPFI 300
           IT++ AG+   N+TP  ++++FN R++  T  + ++E++ +    + Y L+L  S+ PF+
Sbjct: 225 ITDIRAGMEVTNVTPGKLKMMFNVRNNTHTDLKDVEEFVHRYFSGMDYDLKLSQSAKPFV 284

Query: 301 TASHSKLTSVLKENILKTCHTTPLLNTKGGTSDARFFSAHGIEVVEFGVINDRIHAIDER 360
           T   +++  VL   I +     P  +T GGTSDARFF+ +G++VVEFGV ND IHA +ER
Sbjct: 285 TDPDTRVVRVLDRAIAEVTGLAPKHSTAGGTSDARFFAEYGVKVVEFGVRNDTIHAPNER 344

Query: 361 VSLKELELLEKVFLGVLE 378
           V + E+E L +VF  V+E
Sbjct: 345 VPIDEVEGLYRVFRRVIE 362


Lambda     K      H
   0.318    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 378
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 364
Length adjustment: 30
Effective length of query: 353
Effective length of database: 334
Effective search space:   117902
Effective search space used:   117902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_013554584.1 NITSA_RS08335 (succinyl-diaminopimelate desuccinylase)
to HMM TIGR01246 (dapE: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.3571.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3571.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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