Alignments for a candidate for hisH in Methanobacterium lacus AL-21

Align Imidazole glycerol phosphate synthase subunit HisH; IGP synthase glutaminase subunit; IGP synthase subunit HisH; ImGP synthase subunit HisH; IGPS subunit HisH; EC 4.3.2.10; EC 3.5.1.2 (characterized)
to candidate WP_013643643.1 METBO_RS00185 imidazole glycerol phosphate synthase subunit HisH

Query= SwissProt::Q7SIC0
         (200 letters)



>NCBI__GCF_000191585.1:WP_013643643.1
          Length = 203

 Score =  130 bits (327), Expect = 2e-35
 Identities = 77/194 (39%), Positives = 102/194 (52%), Gaps = 12/194 (6%)

Query: 7   LIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVE 66
           +IDYGSGNL+S        G S  ++      ++AD LVLPG G FG  M     + + E
Sbjct: 4   IIDYGSGNLKSIKNGFSKIGTSTHISSSINEIKDADALVLPGVGAFGNAMEGV--ASYQE 61

Query: 67  RVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAG------RVPQMG 120
            +  H+  G PFLGIC+G+Q+L+  SEE+P   GL +V G V  F         ++PQMG
Sbjct: 62  AIHDHIHDGKPFLGICLGLQILFTRSEESPDTTGLDVVEGSVLHFPDSIKESGLKIPQMG 121

Query: 121 WNALEFGGAFAPLTG---RHFYFANSYY-GPLTPYSLGKGEYEGTPFTALLAKENLLAPQ 176
           WN L+  G    L G      YF +SYY  P  P  +      G    A++ K+N+ A Q
Sbjct: 122 WNQLQIRGECPILKGIGSDFMYFVHSYYVAPDDPDVVVATVDYGIDVPAVICKDNVYATQ 181

Query: 177 FHPEKSGKAGLAFL 190
           FHPEKSG  GL  L
Sbjct: 182 FHPEKSGDKGLKIL 195


Lambda     K      H
   0.322    0.141    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 123
Number of extensions: 7
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 203
Length adjustment: 21
Effective length of query: 179
Effective length of database: 182
Effective search space:    32578
Effective search space used:    32578
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_013643643.1 METBO_RS00185 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.18771.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18771.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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