Alignments for a candidate for ilvD in Methanobacterium lacus AL-21

Align dihydroxy-acid dehydratase subunit (EC 4.2.1.9) (characterized)
to candidate WP_013643691.1 METBO_RS00425 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-11919
         (549 letters)



>NCBI__GCF_000191585.1:WP_013643691.1
          Length = 551

 Score =  825 bits (2131), Expect = 0.0
 Identities = 396/551 (71%), Positives = 480/551 (87%), Gaps = 2/551 (0%)

Query: 1   MKSDTIKRGIQRAPHRSLLARCGLTDDDFEKPFIGIANSYTDIVPGHIHLRELAEAVKEG 60
           M+SDTIK+G+ RAPHRSLL  CGL D D +KPFIGIANSYTDIVPGH+HL  +A+ VK+ 
Sbjct: 1   MRSDTIKKGLHRAPHRSLLRACGLNDADMKKPFIGIANSYTDIVPGHVHLNSIADTVKQS 60

Query: 61  VNAAGGVAFEFNTMAICDGIAMNHDGMKYSLASREIVADTVESMAMAHALDGLVLLPTCD 120
           +  AGG+ FEFNTMAICDGIAMNH+GMKYSLASREIVADTVESMAMAH  DGLVL+PTCD
Sbjct: 61  IAEAGGLGFEFNTMAICDGIAMNHEGMKYSLASREIVADTVESMAMAHQFDGLVLIPTCD 120

Query: 121 KIVPGMLMAAARLDIPAIVVTGGPMLPGEFKGRKVDLINVYEGVGTVSAGEMSEDELEEL 180
           KIVPGMLMAAARLDIPAIVVTGGPMLPG++KG+ VDLI+VYE VG VS+G+M+E+E++EL
Sbjct: 121 KIVPGMLMAAARLDIPAIVVTGGPMLPGKYKGKNVDLISVYEAVGAVSSGKMTEEEIDEL 180

Query: 181 ERCACPGPRSCAGLFTANTMACLTEALGMSLPGCATAHAVSSRKRQIARLSGKRIVEMVQ 240
           ERCACPGP SC+GLFTANTMAC+TEA+GMSLP CATAHAV  +K  IA  SGK+I+E+V+
Sbjct: 181 ERCACPGPGSCSGLFTANTMACITEAIGMSLPYCATAHAVDKKKLSIASDSGKKILELVE 240

Query: 241 ENLKPTMIMSQEAFENAVMVDLALGGSTNTTLHIPAIAAEID--GLNINLDLFDELSRVI 298
           +N+ P+ IM+Q+AF+NA+ VD+ALGGS+NT LH+PAIA E++  G+ ++LDLF+++S+ I
Sbjct: 241 KNITPSKIMTQQAFKNAIAVDMALGGSSNTALHVPAIAFELEEQGVKVDLDLFNDMSKEI 300

Query: 299 PHIASISPAGEHMMLDLDRAGGIPAVLKTLEDHINRECVTCTGRTVQENIENVKVGHRDV 358
           PHI  +SPAGEH MLDLD+AGGIPAVLK +E+ ++   +TCTG+++ ENI   +V   +V
Sbjct: 301 PHITHLSPAGEHTMLDLDKAGGIPAVLKVIEEKLDITTITCTGKSLGENIAEARVLDGNV 360

Query: 359 IRPLDSPVHSEGGLAILRGNLAPRGSVVKQGAVAEDMMVHEGPAKVFNSEDECMEAIFGG 418
           I  L+ P+H EGG+A+L+GNLAP GSVVKQGAV EDMMVHEGPAKVF+SE+EC+EAIF G
Sbjct: 361 IHTLEDPIHVEGGIAVLKGNLAPNGSVVKQGAVKEDMMVHEGPAKVFDSEEECVEAIFDG 420

Query: 419 RIDEGDVIVIRYEGPKGGPGMREMLNPTSAIAGMGLERVALITDGRFSGGTRGPCVGHVS 478
           +IDEGDVIVIRYEGPKGGPGMREMLNPTSAI+GM ++ VALITDGRFSGGTRGP +GH+S
Sbjct: 421 KIDEGDVIVIRYEGPKGGPGMREMLNPTSAISGMEIKSVALITDGRFSGGTRGPSIGHIS 480

Query: 479 PEAMEDGPLAAVNDGDIIRIDIPSRKLEVDLSPREIEERLQSAVKPRRSVKGWLARYRKL 538
           PEAM DGPLAAVN+GDII+IDIP+RKLE+ +   EI+ER++ A KP R VKGWLARYRKL
Sbjct: 481 PEAMADGPLAAVNNGDIIKIDIPNRKLELKVPESEIKERIKVADKPERPVKGWLARYRKL 540

Query: 539 AGSADTGAVLR 549
           A SAD GA+LR
Sbjct: 541 ATSADEGAILR 551


Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1161
Number of extensions: 40
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 551
Length adjustment: 36
Effective length of query: 513
Effective length of database: 515
Effective search space:   264195
Effective search space used:   264195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_013643691.1 METBO_RS00425 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.23883.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23883.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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