Alignments for a candidate for ilvH in Methanobacterium lacus AL-21

Align acetohydroxy-acid synthase small subunit (EC 2.2.1.6) (characterized)
to candidate WP_013643697.1 METBO_RS00455 acetolactate synthase small subunit

Query= metacyc::MONOMER-11901
         (169 letters)



>NCBI__GCF_000191585.1:WP_013643697.1
          Length = 166

 Score =  197 bits (502), Expect = 6e-56
 Identities = 98/161 (60%), Positives = 129/161 (80%)

Query: 4   THIISVLVLNKPGVLQRISGLFTRRWYNISSITGGSTDSTDISRMTIVVKGDDKVVEQVV 63
           +H+IS LVL+KPGVLQR++GLFTRR +NI +IT G +++  ++RMTI+ KGD+KV+EQ+ 
Sbjct: 6   SHVISALVLHKPGVLQRVAGLFTRRGFNIETITVGPSENEGLARMTIISKGDEKVLEQIT 65

Query: 64  KQLNKLIEVIKVIDLDEEECVERELCLIKIYAPTESSKSQVIQYANIFRGNIVDLSQESL 123
           KQLNKLI+VIKV DL+    V+RELCLIK++  TE ++S+VIQY NIFRG +VD+S E+L
Sbjct: 66  KQLNKLIDVIKVRDLEPGITVKRELCLIKVHTATEKARSEVIQYTNIFRGRVVDVSPETL 125

Query: 124 TVQITGDKTKISAFIKLVKPMGIKEISRTGLTALMRGPKIL 164
           TV+ITGD  KI A I LV   GIKEI+RTG TA+ RG K +
Sbjct: 126 TVEITGDPEKIEALIDLVSVFGIKEIARTGPTAITRGTKTI 166


Lambda     K      H
   0.317    0.134    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 114
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 166
Length adjustment: 18
Effective length of query: 151
Effective length of database: 148
Effective search space:    22348
Effective search space used:    22348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)

Align candidate WP_013643697.1 METBO_RS00455 (acetolactate synthase small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.9612.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9612.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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