Alignments for a candidate for lysA in Methanobacterium lacus AL-21

Align Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 (characterized)
to candidate WP_013643723.1 METBO_RS00595 diaminopimelate decarboxylase

Query= SwissProt::Q58497
         (438 letters)



>NCBI__GCF_000191585.1:WP_013643723.1
          Length = 428

 Score =  296 bits (759), Expect = 6e-85
 Identities = 173/431 (40%), Positives = 257/431 (59%), Gaps = 22/431 (5%)

Query: 16  GRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKAN 75
           G   I   DA++LAE+FGTPLYV+ E +I+ NY R   AFK +       F + YA KAN
Sbjct: 11  GNLKIGEADAVDLAERFGTPLYVIDENRIRDNYKRLYNAFKDYYPN----FKMFYACKAN 66

Query: 76  ANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAF 135
            NLA+ ++L   G G D VS GE+Y + L+    ++I++ GN  T EE+   +E+ +R  
Sbjct: 67  TNLAVMKILENEGSGIDAVSPGEIYTSLLAGFEPERILYTGNNVTDEELKFAVESGVR-L 125

Query: 136 NVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESGIAMK 195
           N+DSIS+L  +++  +  G    ++FR+NP V    H    TG   +KFG+  E   A++
Sbjct: 126 NLDSISQLKRLSKIPEAKG--MEISFRVNPMVGAGHHDHCITGGPLSKFGIKEEE--AVE 181

Query: 196 AIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVEL-KEEGIEIEDVNLGGG 254
             KMA+E+ +   VG+H HIGS + D  PF+   R +MD   ++ KE G+E + ++ GGG
Sbjct: 182 VYKMAIELGF-KPVGIHSHIGSGILDPEPFMLAVRTLMDTAGKVHKEAGVEFDFIDFGGG 240

Query: 255 LGIPYYKDKQIPTQKDLADAIINTMLKYKDKVE-----MPNLILEPGRSLVATAGYLLGK 309
           +GIPY  ++      D A+ I++    YK K+E      P + +EPGR LV  A  LL K
Sbjct: 241 IGIPYTPEESKLDINDFAEKIVDL---YKAKLEEYDLGTPTMCIEPGRYLVGDASVLLTK 297

Query: 310 VHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCK--VKNEKEVVSIAGGLCESSDV 367
           V+ IK++   K+  +DAG N ++RP MY +YHHI++    +    + + IAG +CES D+
Sbjct: 298 VNTIKQS-YRKFAGVDAGFNTLLRPTMYGSYHHIVSASTPLAESTQTIDIAGDVCESGDL 356

Query: 368 FGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERETYADL 427
           F R+R + ++E GD+LAI + GAY  SMA+ YN+R +P  VL +     +IRERET+ADL
Sbjct: 357 FARERPMPEIEEGDILAILNAGAYAFSMASQYNSRPKPAEVLVNNGETDVIRERETFADL 416

Query: 428 IAKDIVPPHLL 438
             K  VP  LL
Sbjct: 417 FNKQNVPVRLL 427


Lambda     K      H
   0.318    0.138    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 521
Number of extensions: 31
Number of successful extensions: 8
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 428
Length adjustment: 32
Effective length of query: 406
Effective length of database: 396
Effective search space:   160776
Effective search space used:   160776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_013643723.1 METBO_RS00595 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.5830.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5830.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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