Alignments for a candidate for thrC in Methanobacterium lacus AL-21

Align threonine synthase; EC 4.2.3.1 (characterized)
to candidate WP_013644215.1 METBO_RS03125 threonine synthase

Query= CharProtDB::CH_107419
         (405 letters)



>NCBI__GCF_000191585.1:WP_013644215.1
          Length = 399

 Score =  486 bits (1251), Expect = e-142
 Identities = 247/398 (62%), Positives = 305/398 (76%), Gaps = 4/398 (1%)

Query: 4   LKCIECGAEYSRDEVIYTCSKCDGLLDVIYDYSSIKIDMEKLKTECPSVWKYAKLLPV-E 62
           +KCI CG EY  DE+IYTC KCD  L+V+  +  I  D+   +    ++WKY + LPV E
Sbjct: 2   MKCISCGEEYEIDEIIYTCKKCDSTLEVVSSHPDISKDIFSCRKS--TMWKYKEFLPVDE 59

Query: 63  REPVTIQEGGTPLYKCDRLAEKIGIKKLYVKHEGMNPTGSFKDRGMTVGVTKALELGMNT 122
            + V+++EGGTP  KCD+L  ++GI  LYVK EG NPTGSFKDRGM+VG+TKA+ELG+NT
Sbjct: 60  TKIVSLEEGGTPFCKCDKLGSELGID-LYVKVEGSNPTGSFKDRGMSVGMTKAVELGVNT 118

Query: 123 VACASTGNTSAALAIYGAKAGIPVVVLLPAGKVALGKVAQALMHGAKVLSIRGNFDDALA 182
           V CASTGNTSA+LA Y A+AG   +VLLPAGKVALGK+AQA+ HGA+V+SIRGNFD+AL 
Sbjct: 119 VGCASTGNTSASLAAYAARAGKRCIVLLPAGKVALGKLAQAMFHGAEVISIRGNFDEALE 178

Query: 183 LVRTLCSQEKIYLLNSINPYRLEGQKTIGFEIADQLDFKVPDRIVLPVGNAGNITAIYKG 242
            V +L  + ++YLLNS+NPYRLEGQKTIGFEI D L +K PDRIVLPVGNAGNI+AI+KG
Sbjct: 179 TVTSLALEGQLYLLNSVNPYRLEGQKTIGFEIVDDLGWKSPDRIVLPVGNAGNISAIWKG 238

Query: 243 FREFKILGITDSLPKMTGIQAEGSCPIVKAIKSGAPAITPEENPETVATAIRIGNPVNAT 302
            +EF   G  D LP MTGIQAE S PI  A++ G   I P ++PET+ATAIRIG PV+A 
Sbjct: 239 IKEFHEAGFMDDLPMMTGIQAEMSAPITNAVRQGKNTIEPVKDPETIATAIRIGAPVSAQ 298

Query: 303 KALSAIRESGGTAESVTDEEILAAQKDLARLEGIGVEPASAASVAGLRKLVDMGVIGRDE 362
           KAL AI ES G A++VTD+EIL+AQK LAR EGIGVEPASAAS+AGL K+V+ G + + E
Sbjct: 299 KALRAIYESNGYADTVTDDEILSAQKLLARKEGIGVEPASAASIAGLLKMVESGEVDKGE 358

Query: 363 TVVCITTGHLLKDPQTVIDVCEEPTVVDANIDAIREAI 400
            VVCI TGHLLKDP T ID C EP  +DA++  + + I
Sbjct: 359 QVVCIVTGHLLKDPNTAIDACVEPLEIDADVKTLSKII 396


Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 573
Number of extensions: 28
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 399
Length adjustment: 31
Effective length of query: 374
Effective length of database: 368
Effective search space:   137632
Effective search space used:   137632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_013644215.1 METBO_RS03125 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.19706.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19706.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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