Align Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 (characterized)
to candidate WP_013644223.1 METBO_RS03165 phosphoribosyl-AMP cyclohydrolase
Query= SwissProt::O26347 (138 letters) >NCBI__GCF_000191585.1:WP_013644223.1 Length = 132 Score = 184 bits (467), Expect = 4e-52 Identities = 85/126 (67%), Positives = 103/126 (81%) Query: 12 LNFRHNINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGE 71 LNFRH + GE L+IA+AQDH + EVLMVAYMN EAL++TLETG AHY+STSR KLWLKGE Sbjct: 6 LNFRHEVGGEKLVIAIAQDHVSSEVLMVAYMNEEALKKTLETGIAHYYSTSRKKLWLKGE 65 Query: 72 SSGHVQRVKDVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSIDGDELKVREDAVKVFDP 131 SSGH Q VK+VL DCD DAV+LKVEQ GGACH GY SCF+R I+ D +++ K+F+P Sbjct: 66 SSGHTQEVKEVLTDCDEDAVLLKVEQNGGACHEGYYSCFFRKIETDSGELKLVKQKIFEP 125 Query: 132 EEIYGD 137 E+IYG+ Sbjct: 126 EQIYGE 131 Lambda K H 0.318 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 113 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 138 Length of database: 132 Length adjustment: 15 Effective length of query: 123 Effective length of database: 117 Effective search space: 14391 Effective search space used: 14391 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)
Align candidate WP_013644223.1 METBO_RS03165 (phosphoribosyl-AMP cyclohydrolase)
to HMM PF01502 (PRA-CH)
../bin/blast/fastacmd -i /tmp/list.22514.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22514.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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