Alignments for a candidate for trpD_2 in Methanobacterium lacus AL-21

Align anthranilate phosphoribosyltransferase (EC 2.4.2.18) (characterized)
to candidate WP_013645612.1 METBO_RS10090 anthranilate phosphoribosyltransferase

Query= BRENDA::Q9YGB4
         (325 letters)



>NCBI__GCF_000191585.1:WP_013645612.1
          Length = 348

 Score =  217 bits (552), Expect = 4e-61
 Identities = 137/335 (40%), Positives = 196/335 (58%), Gaps = 23/335 (6%)

Query: 4   LAKIVDGKNLSFEEAYELFNELKGSDG--VLIGAYLAALQTKGYTGEELAGLARAMRDSA 61
           L K+V G +L+ +EAY    E+   +   +   A+L AL  KG T +E+ G  +AMR+  
Sbjct: 6   LKKVVAGNDLTQDEAYTSMMEMTSGEAGEIRTAAFLTALSMKGETADEITGFVKAMRELC 65

Query: 62  VKL----DLGKVADTAGTGGDGSSTINVSTASALILSAF-TRVAKHGNVSITSKSGSANV 116
           +++    DL  V DT GTGGD   T N+ST +A+I +A    +AKHGN SITSK G A++
Sbjct: 66  IEVSPETDLPLV-DTCGTGGDRLKTFNISTTAAIIAAASDVAIAKHGNRSITSKCGGADI 124

Query: 117 LEALGLNIRVSPERAREMVESTNFTFIFAPAYHPALRPIMPVRKALGIKTVFNVIGPLAN 176
           LEALG+NI          +E+   +FIFAP +HP+++ IMPVR+ LGI+TVFN++GPL +
Sbjct: 125 LEALGVNINCDKSSVERCIETCKISFIFAPNFHPSMKRIMPVRQELGIRTVFNILGPLTS 184

Query: 177 PADPAYQVVGVNSPELLEPVAEALEFLGVERALVVHG------SGMDEVSPHRETLVLEV 230
           PA+   Q++GV  PE +E +A+ L+ L V+ A+VVHG        MDE+S   +T V  +
Sbjct: 185 PANADIQLLGVFDPEYVEIIADVLKNLDVKHAMVVHGFDENDDPAMDEISTIGKTRVAIL 244

Query: 231 GNG-VERYTLSPEDFGIEPVKPLPCSSP---EESAARIKAVLGGSG----RREDRDFILV 282
            NG V    + PEDFG++  K     +P   EE+   +K VL G       R   D  LV
Sbjct: 245 ENGRVTVKDIYPEDFGVKRSKSRFIRAPETIEENIQVVKDVLSGKNSTTEERAKLDMCLV 304

Query: 283 NASAALYASGVAEDFREGLEMAREALGQG-MLEKL 316
           NA+A LY +G A+  + G + A   +  G  LEKL
Sbjct: 305 NAAAILYIAGQADSLKMGYQNAYATVKSGRALEKL 339


Lambda     K      H
   0.314    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 260
Number of extensions: 11
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 348
Length adjustment: 28
Effective length of query: 297
Effective length of database: 320
Effective search space:    95040
Effective search space used:    95040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)

Align candidate WP_013645612.1 METBO_RS10090 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.14495.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14495.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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