Alignments for a candidate for ilvE in Desulfobacca acetoxidans DSM 11109

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_013705230.1 DESAC_RS01095 branched-chain amino acid transaminase

Query= reanno::BFirm:BPHYT_RS16285
         (307 letters)



>NCBI__GCF_000195295.1:WP_013705230.1
          Length = 305

 Score =  367 bits (941), Expect = e-106
 Identities = 173/305 (56%), Positives = 224/305 (73%)

Query: 3   MADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHTKR 62
           M D+   IW+DGK I W  A++H+LTHTLHYG+GVFEGVRAY+ A+G TAIFRL EHT+R
Sbjct: 1   MVDKAKFIWLDGKFIPWDQAQVHILTHTLHYGLGVFEGVRAYQCANGRTAIFRLPEHTRR 60

Query: 63  LLNSAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIHVA 122
           L +SA I QM++PF  + +  A  E +R+N  +  YLRP+I++G   +G+  + N I VA
Sbjct: 61  LFDSAHILQMEIPFSEDDINQACIEALRQNDQKEAYLRPLIFIGDGAMGLHPQNNPIRVA 120

Query: 123 IAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADGYD 182
           +  W WGAYLG++G+  GIR+KTSSFTRHHVNV M  AK  G YVNSILA +E    GYD
Sbjct: 121 VITWVWGAYLGDEGLLSGIRLKTSSFTRHHVNVMMTSAKGVGNYVNSILAKREVTKAGYD 180

Query: 183 EALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEKRI 242
           EALLLD  GYV+E SGEN F+V NG + TP  +S L GITRD VI +A+D GI + E R 
Sbjct: 181 EALLLDTAGYVAEASGENIFMVKNGIIKTPPSTSILPGITRDCVIVIAKDLGIPIQEARF 240

Query: 243 TRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIVNGKSDKYAN 302
           +RD++Y  DEAF +GTAAE+TP+RELD+R IG+G  GPIT+K+Q  +FD V+GK  +Y +
Sbjct: 241 SRDDLYIADEAFLSGTAAEITPVRELDDRRIGTGKPGPITKKIQETYFDAVHGKKPRYDS 300

Query: 303 WLTKI 307
           WLT +
Sbjct: 301 WLTYV 305


Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 333
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 305
Length adjustment: 27
Effective length of query: 280
Effective length of database: 278
Effective search space:    77840
Effective search space used:    77840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_013705230.1 DESAC_RS01095 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.30873.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30873.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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