Alignments for a candidate for thrC in Desulfobacca acetoxidans DSM 11109

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_013705335.1 DESAC_RS01620 threonine synthase

Query= reanno::Miya:8501211
         (492 letters)



>NCBI__GCF_000195295.1:WP_013705335.1
          Length = 496

 Score =  547 bits (1410), Expect = e-160
 Identities = 286/486 (58%), Positives = 344/486 (70%), Gaps = 8/486 (1%)

Query: 12  HDFPTARTRMEYVCLGCGERRGIDELLYTCPSCGGVYLLEDLDFDTLAEQRTGPEWRALF 71
           H  P  R RM Y CL CG   GID L YTCP C G++LL DLD + L E  +G  WR LF
Sbjct: 13  HLLPRPRGRMVYRCLDCGAEFGIDHLFYTCPKCQGLFLLVDLDEEQLKEH-SGAFWRRLF 71

Query: 72  DARAATRTTALRGIFRFYELMAPVLEEEDIVYLGEGNTPIVEAAPVLRDAVGIPFAFKND 131
           D R      A++G F F+EL+APV+  EDIVYLGE +TP V+A   L++ VG+   FKND
Sbjct: 72  DYRRMLHDPAVQGAFCFHELIAPVIPAEDIVYLGECHTPQVQANSRLQEEVGMTVYFKND 131

Query: 132 GQNPSASFKDRGMACAFSYLKALVRKHGWDEVLTVCASTGDTSAAAALYASYVGGPVKSV 191
           GQNPSASFKDRGMA A SYL  L+R      VL +CASTGDTSAAAALYA+Y+G  V S 
Sbjct: 132 GQNPSASFKDRGMAAALSYLNYLIRTQNLTGVLAICASTGDTSAAAALYAAYLGDKVTSA 191

Query: 192 VLLPHGKVTPQQLSQPLGSGATVLEIPGVFDDCMKVVEHLAENYRVALLNSKNSWRILGQ 251
           V+LP+GKVTPQQLSQPLG+GA VLEIPGVFDDCM+VVE L+E+Y VALLNSKNSWRI GQ
Sbjct: 192 VILPYGKVTPQQLSQPLGAGARVLEIPGVFDDCMRVVEALSEHYHVALLNSKNSWRIRGQ 251

Query: 252 ESYAFEVAQWYGWDMKGQCVFVPIGNAGNVTAIMAGFLKLLRLGVIDALPRVIGVQSHHA 311
           ESYA+E+AQW+ +D+  + + VPIGNAGN+TA++ G L+   L +I  LP+VIGVQS HA
Sbjct: 252 ESYAYEIAQWFDYDLAHKVIVVPIGNAGNITAVLEGLLRFHDLQIIAELPKVIGVQSQHA 311

Query: 312 DPVWRYYSQPDPATRTYAPVTVQPSVAQAAMIGNPVSFPRVKALADRFIAEGGERAFSVV 371
           +PV+ YY + +PA R + PV VQPSVAQAAMIG PVS PRV  LA  +    GE +F+VV
Sbjct: 312 NPVFTYYLESNPARRVFTPVVVQPSVAQAAMIGRPVSMPRVIRLAAEYTRRAGEGSFAVV 371

Query: 372 QVTEQEIMDAMIRGNRHGHIACTQGGECLAGLIKARELGLVSQGEHAVLDATAHSLKFAG 431
           +VTEQEIMDAM+  NR+GHIACTQGGE LAGL  A + GLV + E AV+DATAH LKF G
Sbjct: 372 EVTEQEIMDAMLLANRNGHIACTQGGESLAGLQMALKTGLVKKNEVAVVDATAHHLKFIG 431

Query: 432 FQDMYFTNSFPPEYGVTPDASLANAPALVVSPEDKARLSP------EAYTLAAAKAVVAR 485
           FQ MYF N+FP E+ + P     N P L++ PE     SP        +T    + V A 
Sbjct: 432 FQQMYFDNTFPSEFEIIPKPEYQNHPQLLI-PESPPGESPWSEAEQRIFTQDMVRQVAAV 490

Query: 486 LGLAKK 491
           LGL  K
Sbjct: 491 LGLKPK 496


Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 677
Number of extensions: 20
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 496
Length adjustment: 34
Effective length of query: 458
Effective length of database: 462
Effective search space:   211596
Effective search space used:   211596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_013705335.1 DESAC_RS01620 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.6377.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6377.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.