Alignments for a candidate for cmutase in Desulfobacca acetoxidans DSM 11109

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_013705645.1 DESAC_RS03225 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000195295.1:WP_013705645.1
          Length = 361

 Score =  281 bits (720), Expect = 1e-80
 Identities = 150/356 (42%), Positives = 213/356 (59%), Gaps = 6/356 (1%)

Query: 8   KALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHIMEL 67
           K++R +ID  DE++L LI++R + AQ +  +K       E+     P+RE  VL  +   
Sbjct: 5   KSVRRQIDITDEQLLTLINQRLQLAQTIGEIKNR-----EDLATLDPKREQEVLDRLKRF 59

Query: 68  NKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKPMAAI 127
           N GPL  E +  +FREI+S+   +++PL VA+LGPE TF+  AA+K FG S   KP+  I
Sbjct: 60  NTGPLTEEGLRNIFREIISAARQVQRPLSVAFLGPEATFTHLAAIKKFGRSTFFKPLPTI 119

Query: 128 DEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGETTK 187
            EVF  V     + GV+P+ENSTEG VN TLD F+E  + ICGE+ L I H L +  + +
Sbjct: 120 SEVFMAVEKSNHHLGVIPIENSTEGVVNETLDQFVETKLQICGEIYLEISHDL-ISRSGQ 178

Query: 188 TDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDMAAQL 247
            + I  IY+H  +  QCRKWL  H P +  + VSS   AA++     NSAAIA   AA L
Sbjct: 179 INDIEIIYTHPHAHGQCRKWLQGHLPQIPVLEVSSTGLAAQKAAHNPNSAAIASGFAASL 238

Query: 248 YGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLMPFHSNG 307
           Y L  +  +IED   N+T F IIG      TG DKTSII ++ + PGAL+ +L P    G
Sbjct: 239 YELRVVESRIEDHRENATHFFIIGPYAPGATGADKTSIIFAVADTPGALYNMLRPLAERG 298

Query: 308 IDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYPKA 363
           I++TRI +RP ++  W Y+FF+D  GH Q+  ++  L ++   +   K+LGS+PKA
Sbjct: 299 INMTRIVSRPMKTVAWRYLFFVDLDGHLQESALQECLHEMEEMSAFFKILGSFPKA 354


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 334
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 361
Length adjustment: 29
Effective length of query: 336
Effective length of database: 332
Effective search space:   111552
Effective search space used:   111552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_013705645.1 DESAC_RS03225 (prephenate dehydratase)
to HMM PF01817 (CM_2)

Software error:

../bin/blast/fastacmd -i /tmp/list.25166.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25166.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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