Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_013706026.1 DESAC_RS05195 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000195295.1:WP_013706026.1
Length = 1080
Score = 1241 bits (3211), Expect = 0.0
Identities = 638/1084 (58%), Positives = 804/1084 (74%), Gaps = 15/1084 (1%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKRTDIK ILI+G+GPI+I QACEFDYSG QACKAL+EEG+ V+L+NSNPATIMTDPE+
Sbjct: 1 MPKRTDIKKILIIGSGPIIISQACEFDYSGVQACKALKEEGFEVVLINSNPATIMTDPEI 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
AD TYIEPI E+V KIIE+ERPDA+LPT+GGQT LNCA+ + G+L+ GV MIGA+
Sbjct: 61 ADRTYIEPITPEMVCKIIERERPDAILPTLGGQTGLNCAVAVADTGILKRLGVEMIGASP 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
+ I KAEDR+ F AM I L S I +M E L + +P I+RPSFT+GG+GGG
Sbjct: 121 EVIKKAEDRQLFRDAMANINLRVPTSVIVRSMAEVLEAPEVLSYPIIVRPSFTLGGTGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
IAYN E+ +E+ A GL+ S +E++++ES++GWKE+E+EV+RD DN +I+CSIEN D M
Sbjct: 181 IAYNLEDLKELSAYGLEASMIQEVMLEESVLGWKEFELEVMRDVKDNVVIICSIENLDPM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPAQTL+D+EYQ MR+AS+A++REIGVETGGSN+QFAV P+ G ++VIEM
Sbjct: 241 GVHTGDSITVAPAQTLSDREYQRMRDASLAIIREIGVETGGSNIQFAVQPQTGEMVVIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAK+AAKLAVG+TLDE+ NDIT T ASFEPSIDY V KIP
Sbjct: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGFTLDEIPNDITK-ETYASFEPSIDYCVVKIP 359
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGF--DPKVSLDDP 418
R+ FEKF GA D LTT MKSVGEVMAIGRT +E+LQK LR LE+ G D K + P
Sbjct: 360 RWTFEKFPGAEDLLTTSMKSVGEVMAIGRTFKEALQKGLRSLEISRFGLGADGKDIKEQP 419
Query: 419 EALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAE 478
+ R L+ + R++Y+ AFR G+S+ V+ LT ID WFL QI ++V+ +++A
Sbjct: 420 WEIMLDR--LRTPNSQRLFYLRQAFRQGMSIPEVYELTKIDSWFLSQIRDMVQFSDELAS 477
Query: 479 VGITGLN-------ADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDT 531
GI A+ LR+ K GF+D +LA L G+ E +IR+LR YD+ PVYK VDT
Sbjct: 478 YGILLQQGREGPHLAEMLRRAKEFGFSDVQLAHLWGLTEEKIRRLRLDYDIRPVYKLVDT 537
Query: 532 CAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALRE 591
CAAEF T Y YSTYE E E+ S +R K+++LGGGPNRIGQGIEFDYCC HAS AL+E
Sbjct: 538 CAAEFEAYTPYYYSTYEVEDESRRS-ERSKVVILGGGPNRIGQGIEFDYCCCHASFALKE 596
Query: 592 DGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLA 651
G E+IMVN NPETVSTDYDTSD+L+FEP+T EDVL I+ EKP G+IVQ+GGQTPL LA
Sbjct: 597 MGIESIMVNSNPETVSTDYDTSDKLFFEPLTREDVLNIIASEKPLGLIVQFGGQTPLNLA 656
Query: 652 RALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYP 711
L AG ++GTSPDAIDRAEDRERF+ + LKL+QP N T + A++ AK+IGYP
Sbjct: 657 VPLAQAGAKILGTSPDAIDRAEDRERFKRLLSGLKLRQPDNGTAASTAQALKIAKQIGYP 716
Query: 712 LVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGE 771
+VVRPSYVLGGRAM+IV D+ L + A+ S + P+L+D FL+DA+EVDVDAI DG+
Sbjct: 717 VVVRPSYVLGGRAMQIVADDRVLANFMSWALEASPEHPILIDKFLEDAIEVDVDAIADGK 776
Query: 772 MVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFA 831
+IGGIMEHIE+AG+HSGDSAC LP Y+L I + +Q Q LA EL V GLMN+QFA
Sbjct: 777 TTIIGGIMEHIEEAGIHSGDSACVLPPYSLPPAILKEITRQTQALAAELGVVGLMNIQFA 836
Query: 832 VKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVK 891
VK+ +VY++EVNPRA+RT+PFVSKATGVPLAK+A +VM G +L E G T++ PPY++VK
Sbjct: 837 VKDGQVYILEVNPRASRTIPFVSKATGVPLAKLATKVMLGATLDELGFTRQAKPPYFAVK 896
Query: 892 EVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVRE 951
E V PF +FPGVDPLLGPEMRSTGEVMG+ FA +FAK+Q+ + + G L SV+
Sbjct: 897 EAVFPFRRFPGVDPLLGPEMRSTGEVMGLDENFALSFAKSQIAAGQQLPLEGGVLFSVKN 956
Query: 952 GDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYT 1011
DK ++++ K GFEL AT GTA L + G+ +V+K+ GRP+I DRIK+ +
Sbjct: 957 SDKPALLEIVRGFQKLGFELLATQGTADYLCQHGVKVAMVHKIRAGRPNIIDRIKSQDIA 1016
Query: 1012 YIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEK--VISVQEMH 1069
+INT GR +DS IRR+AL+Y + Y TT+ AT A+ A T + V S+QE H
Sbjct: 1017 LLINTPQGRYTTDDSFSIRRTALEYDIPYTTTIAAARATLEAIRAVKTGQLTVKSLQEYH 1076
Query: 1070 AQIK 1073
+K
Sbjct: 1077 TSLK 1080
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3028
Number of extensions: 151
Number of successful extensions: 15
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1080
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1034
Effective search space: 1061918
Effective search space used: 1061918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_013706026.1 DESAC_RS05195 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.14644.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14644.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.