Alignments for a candidate for serA in Desulfobacca acetoxidans DSM 11109

Align D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 (characterized, see rationale)
to candidate WP_013706247.1 DESAC_RS06355 phosphoglycerate dehydrogenase

Query= uniprot:Q6LWW6
         (523 letters)



>NCBI__GCF_000195295.1:WP_013706247.1
          Length = 526

 Score =  439 bits (1128), Expect = e-127
 Identities = 229/525 (43%), Positives = 332/525 (63%), Gaps = 4/525 (0%)

Query: 3   KILITDPLHESAVEILKQAGEVEVAT--GLTVEELKLKIKDVDALVIRSGTTATREIIEA 60
           K+LI+D LH   V I +QA  +EV    G+  EE    ++DVD LVIRS T  T +++E 
Sbjct: 2   KVLISDNLHAHGVAIFEQAPNIEVINRPGMPPEEFMEVVQDVDGLVIRSATKVTDKVLEV 61

Query: 61  SENLKVIARAGVGVDNVDLDAATEKGIVVVNAPDASSISVAELLFGMMLAAARNIPQATA 120
           +  LKV+ RAG G+DNV++  AT++GIVV+N P  ++++  E    MMLA ARNIPQA  
Sbjct: 62  ASRLKVVGRAGTGLDNVNIPEATKRGIVVMNTPGGNTVTTGEHAISMMLALARNIPQAAH 121

Query: 121 SIKSGKWDRKSFKGMEIYGKTLGIVGLGRIGQQVAKRAQAFGMTIVAYDPYIPEDVASEL 180
           S++ G+W++K F+G E+Y KTLGI+GLGRIG  VA RAQ   M I+ YDP++ +++ +  
Sbjct: 122 SMREGRWEKKRFQGREVYNKTLGIIGLGRIGTVVAGRAQGLKMRILGYDPFVKKEMVTSC 181

Query: 181 GIKLLTVDELCTVSDFITLHVPLTPKTKHMIGKEQIALMKSNMVIMNCARGGLIDEAALY 240
           G++L+T+DEL   SDFITLH P T  T H+I +E    MK  ++++NCARGGLIDE AL 
Sbjct: 182 GVELVTLDELFARSDFITLHTPKTKDTAHIISREAFRKMKRGVMLINCARGGLIDEEALK 241

Query: 241 DALNSGKIKAAALDVFEQEPPKESPLLTLNNLIGTPHQGASTEEAQLSAGTIVAEQTVKI 300
           +AL  G +  AALDVFEQEPP  SPLL + N++ TPH GASTEEAQ +    +AEQ V  
Sbjct: 242 EALEEGIVAGAALDVFEQEPPVGSPLLLMGNVVCTPHLGASTEEAQENVAVAIAEQMVDY 301

Query: 301 LKGESAENVVNLPMVPTEKMKKLKPYMVLAEKMGSMAIQYLDNSIELLEITYMGGLAKEK 360
           L   + +N VN P V  E + +L+PY+ LAE +G+   Q  +  I+ + I Y+G ++K  
Sbjct: 302 LLNGTVKNAVNAPSVSGEVLNQLRPYLTLAEALGAFQAQIAEGPIDSVNIEYIGEISKLD 361

Query: 361 TEILKRSFLKGILAPILLAGVNLVNAPVIAKSRNIKIAEGTM-SESDYGNSIKISAKGEN 419
           T  L  S +KG+L P++   VN VNAP IAK R I + E  + S  D+   I+++ +   
Sbjct: 362 TTPLMHSIMKGLLYPVMRDEVNYVNAPAIAKDRGIHLTETKVESAEDFTTLIRLTVRAAQ 421

Query: 420 DEISIIGSI-EHNEVVFREINGYRMDIKPEGTICIIKHIDRPGMVGKVGVLLGEHGINIA 478
            E  + G+I    E     IN +R++  PEG +  I + DRPG++G +G  +G H INIA
Sbjct: 422 KENILAGTIFGRYEPRLVRINAFRLEAVPEGHMLFIYNTDRPGVIGAIGTTIGNHKINIA 481

Query: 479 GMQVGRREPGGHSIMFLDIDHMISDEVLDEIRKMENVRAAKSINI 523
            M VG+ +  G +I+ L  D  ++ E L ++R + +V +A  + +
Sbjct: 482 RMTVGQEKERGQNIILLTTDTSVTPECLADVRALPHVASAHPLEL 526


Lambda     K      H
   0.316    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 695
Number of extensions: 32
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 526
Length adjustment: 35
Effective length of query: 488
Effective length of database: 491
Effective search space:   239608
Effective search space used:   239608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_013706247.1 DESAC_RS06355 (phosphoglycerate dehydrogenase)
to HMM TIGR01327 (serA: phosphoglycerate dehydrogenase (EC 1.1.1.95))

Software error:

../bin/blast/fastacmd -i /tmp/list.18921.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18921.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.