Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_013707085.1 DESAC_RS10675 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000195295.1:WP_013707085.1
Length = 1066
Score = 1045 bits (2701), Expect = 0.0
Identities = 543/1076 (50%), Positives = 740/1076 (68%), Gaps = 13/1076 (1%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MP+R DIK ++I+G+GPIVIGQACEFDYSG QACKALR+ GY ++LVNSNPATIMTDP M
Sbjct: 1 MPRRPDIKKVMIIGSGPIVIGQACEFDYSGTQACKALRQLGYEIVLVNSNPATIMTDPGM 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
AD TYIEP++ + +II+KE+PDA+LP +GGQ+ LN + EL R GVLE++GV +IG
Sbjct: 61 ADFTYIEPLNLASMTEIIKKEQPDALLPNLGGQSGLNLSSELARSGVLEKYGVRIIGVEV 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
DAI + EDR F M ++G++ S IA + EEA +A +G+P ++RP++TMGG GGG
Sbjct: 121 DAIQRGEDRLAFKETMNRLGIDMPESAIATSPEEAERIADKLGYPVVVRPAYTMGGWGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
+ YN EE I +RG+ S ++L++ES++GW+E E+EVVRD + I VC IEN DAM
Sbjct: 181 LVYNLEELRTIASRGISASLVGQILVEESVLGWEELELEVVRDAKNQMITVCFIENVDAM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDS AP T+ + Q+++ S ++ I V GG+N+QFA NP+ GR++VIE+
Sbjct: 241 GVHTGDSFCTAPMLTIAPELQQLLQKYSYDIVEAIQV-IGGTNIQFAHNPRTGRVVVIEI 299
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPR SRSSALASKATGFPIA V++ LA G TLDE+ G T + PS DYVV K
Sbjct: 300 NPRTSRSSALASKATGFPIAFVSSLLAGGLTLDEIPYWREG--TLDKYTPSGDYVVVKFA 357
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420
R+ FEKF GA DRL TQM++VGEVM+IG+T +E+LQKA+R LE+G G
Sbjct: 358 RWAFEKFPGAVDRLGTQMRAVGEVMSIGKTYKEALQKAIRSLEIGRHGLGFAKDFHSLP- 416
Query: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
L +I +L + ++R + + +A R G +D ++ T I WF+ Q+ +LV LEE++ +
Sbjct: 417 LEQIMEKLDEPSSERQFLMYEALRKGADIDALYRKTFIKPWFIQQMRQLVDLEEEILQYR 476
Query: 481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT 540
L L Q K+ GFAD LAKL + E ++R+ R LH + V E A
Sbjct: 477 GRELPPALLEQAKKDGFADLYLAKLLEMPEEKLREQRLSLGLHQAWAPVPVSGVENA--- 533
Query: 541 AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN 600
AY YSTY + S+ R K+MVLGGGPNRIGQGIEFDYCCVHA+ ALR++G+E+IMVN
Sbjct: 534 AYYYSTYNAPDQVATSS-RRKVMVLGGGPNRIGQGIEFDYCCVHAAFALRDEGFESIMVN 592
Query: 601 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP 660
CNPETVSTDYDTSD+LYFEP+T+EDVL I EKP+G+IVQ+GGQTPL +A L AAGV
Sbjct: 593 CNPETVSTDYDTSDKLYFEPLTVEDVLSIYHKEKPEGMIVQFGGQTPLNIAGELAAAGVT 652
Query: 661 VIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720
++GTSPD ID AEDR+RF+ + RL + QP + ++E A+E A+ IGYPL+VRPSYVL
Sbjct: 653 ILGTSPDVIDLAEDRDRFRQTMARLGIPQPESDMAASLEEALEAARRIGYPLMVRPSYVL 712
Query: 721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME 780
GGRAME+V+DE LR Y AV VS P+L+D FL++A+E + DA+ DG + +ME
Sbjct: 713 GGRAMEVVHDEEMLRHYVAAAVGVSRKRPILIDRFLENAIEAEADAVADGTDAFVPAVME 772
Query: 781 HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI 840
HIE AG+HSGDSAC +P ++ + + + + +++A EL+V GLMN+Q+A+ ++ VY++
Sbjct: 773 HIELAGIHSGDSACVIPPISIPPKHLETICEYTRRIAMELKVIGLMNIQYAIAHDTVYVL 832
Query: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGV-TKEVIPPYYSVKEVVLPFNK 899
E NPRA+RTVP VSK +P+A++A ++M GK LA+ + TK ++ VKE V PFN
Sbjct: 833 EANPRASRTVPLVSKVCNIPMARLATQLMLGKKLADLNLKTKNF--NHFGVKEAVFPFNM 890
Query: 900 FPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVD 959
FP VDP+LGPEMRSTGEV+G+ +F AF KAQ + T+ + G LL+V E D+ V++
Sbjct: 891 FPEVDPVLGPEMRSTGEVLGMAASFGLAFYKAQEAAQQTLPEEGTVLLTVSEKDRPAVLE 950
Query: 960 LAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSG 1019
+A GF++ AT GT L + GI L+ K+HEGRPHI D IK+ E ++NT SG
Sbjct: 951 VARLFAHLGFKIKATVGTHKFLSDNGIPAELILKMHEGRPHIVDSIKSREIQLVVNTPSG 1010
Query: 1020 RRAIEDSRVIRRSALQYKVHYDTTLNGGFATA--MALNADATEKVISVQEMHAQIK 1073
+ + D IR++A++YK+ Y TTL G A A +A + ++ S+QE H I+
Sbjct: 1011 KLSQHDDSYIRKAAIKYKIPYITTLAGALAAARGIAASRQGHGRIWSLQEYHEGIQ 1066
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2723
Number of extensions: 123
Number of successful extensions: 17
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1066
Length adjustment: 45
Effective length of query: 1028
Effective length of database: 1021
Effective search space: 1049588
Effective search space used: 1049588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_013707085.1 DESAC_RS10675 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.19527.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19527.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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