Alignments for a candidate for leuA in Desulfobacca acetoxidans DSM 11109

Align 2-isopropylmalate synthase 1; Alpha-IPM synthase 1; Alpha-isopropylmalate synthase 1; EC 2.3.3.13 (characterized)
to candidate WP_013707453.1 DESAC_RS12570 2-isopropylmalate synthase

Query= SwissProt::Q8F445
         (501 letters)



>NCBI__GCF_000195295.1:WP_013707453.1
          Length = 514

 Score =  481 bits (1239), Expect = e-140
 Identities = 245/496 (49%), Positives = 337/496 (67%), Gaps = 1/496 (0%)

Query: 7   VRIFDTTLRDGEQCPGAAMTENEKLEIASQLATMKVDIIEAGFPVSSPVQFQAVERIARE 66
           V IFDTTLRDGEQ PGA++   EK++IA  L  ++VD+IEAGFP +S     AV  IA+E
Sbjct: 5   VIIFDTTLRDGEQSPGASLNTKEKIQIAKHLEMLRVDVIEAGFPFASRGDLGAVRSIAQE 64

Query: 67  TEGPMIAALARAMKADIEAASKALQPAKKRRIHTFIASSPIHMKYKLGKEPKEVLKMAVE 126
                IA LARA K D++AA  A++ A+  RIHTFI++S IH+KY++ K  ++VL+ A  
Sbjct: 65  IRSVQIAGLARARKDDLDAAWLAIKEAENPRIHTFISTSDIHLKYQMQKTREQVLEEAAA 124

Query: 127 AVTLCRQFVDDVEFSPEDATRSEPEFLRELCEAVIAAGATTINIPDTVGYTTPAEYGGLF 186
           AV    +   +VEFS  DA+RS+ +++ ++  A IAAGATT+N PDTVGY  P E+G   
Sbjct: 125 AVKYAARLTSNVEFSAMDASRSDLDYVAQVFTAAIAAGATTVNFPDTVGYAIPEEFGAKI 184

Query: 187 KFLLSNVRGAEKIIFSAHCHNDLGLATANSLAAVQNGARQIECTINGIGERAGNTAMEEV 246
           K+L+ ++    + + S HCHNDLGLA ANSLAA+ NGA Q+ECTINGIGERAGNT+MEEV
Sbjct: 185 KYLVEHIPNIHQAVISVHCHNDLGLAVANSLAAIMNGALQVECTINGIGERAGNTSMEEV 244

Query: 247 VMAMRTRKDTFGIQTQIKTEEIARASYLVKTITGMLVQPNKAIVGANAFAHESGIHQDGV 306
           VMA+ TRKD F   T + T+ I   S LV  +TGMLVQPNKAIVGANAFAHESGIHQD V
Sbjct: 245 VMALATRKDFFDYYTDVVTQHIYPTSRLVSKLTGMLVQPNKAIVGANAFAHESGIHQDAV 304

Query: 307 IKHRETYEIMKPETVGLSSNRMVLGRHSGRAGFKDRIVKLGFSPQVEELEAAYQRFLEIA 366
           +K   T+EIM P+++G+  + + LG+ SGR   ++++  +G+    ++L   + RF ++A
Sbjct: 305 LKEASTFEIMTPQSIGIKESTLPLGKLSGRHALREKLKVMGYGLAEDDLNRVFVRFKDLA 364

Query: 367 DRKKEIYDEDIRALFSEEA-RKSTGDRFQLEGFTVSTGTKSTPTAGVRILIDGHVREESA 425
           DRKK I+DED+ +L   E  R+S  + ++L    V TGT + PTA V++ IDG V   S 
Sbjct: 365 DRKKHIFDEDLESLVEMEVLRRSAPEHYKLAELVVLTGTMAKPTATVKLEIDGEVHRYST 424

Query: 426 TGDGPVDAIYKAIQKTTGMDPEVSRLVISPVTEGQDAMAEASVTLEYKGDRVVGKGSSTD 485
            GDGP+DA + AI+  T     + +  +S +T G DA+ E SV LE +G+ V G+G   D
Sbjct: 425 FGDGPIDATFNAIKHLTKSHCNLLKFSVSSITGGTDALGEISVRLEEEGNTVTGRGVDPD 484

Query: 486 IIEACSRAYISALNRL 501
           I+ A +RA+++ LNRL
Sbjct: 485 IVTASARAFLNGLNRL 500


Lambda     K      H
   0.316    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 547
Number of extensions: 17
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 514
Length adjustment: 34
Effective length of query: 467
Effective length of database: 480
Effective search space:   224160
Effective search space used:   224160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_013707453.1 DESAC_RS12570 (2-isopropylmalate synthase)
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.9796.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9796.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.